PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_026020_gcng.t2 | ||||||||
Common Name | SOVF_026020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27876.6 Da PI: 8.6038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.7e-13 | 51 | 97 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++E+rRRdriN +++Lr+l+Pk+ k ++Ka+ Le++ve +k+L Sp_026020_gcng.t2 51 NHRQAEKRRRDRINGQLARLRRLIPKS----EKQMDKAALLERVVEQVKDL 97 799***********************8....577************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.723 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-13 | 50 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-13 | 50 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.49E-9 | 51 | 100 | No hit | No description |
Pfam | PF00010 | 1.4E-10 | 51 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-9 | 53 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00164 | 150 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPHHFNATNT TSSSMHLQEL PANCYALEFQ EPFEGFAEFE DKASAADSSH NHRQAEKRRR 60 DRINGQLARL RRLIPKSEKQ MDKAALLERV VEQVKDLKRK ASEISKIFTI PSEIDDITIE 120 CHRKENHPNN NNNNNNNNNS NSNIMFMKAT LCCEDRPDLI PELIRELKDL NLTVIGADIG 180 CLGGRMKSIL LLYYKLDSNN DGVVCNVSAI KQSLMGVLTR IISWSSASTS SFRVTSKRQR 240 FFFSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021859517.1 | 1e-160 | transcription factor bHLH51 isoform X2 | ||||
TrEMBL | A0A0K9RUU5 | 0.0 | A0A0K9RUU5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689462.1 | 1e-109 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-38 | bHLH family protein |