PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_025860_onex.t2 | ||||||||
Common Name | SOVF_025860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | C3H | ||||||||
Protein Properties | Length: 106aa MW: 11956.5 Da PI: 9.573 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.4 | 7.4e-11 | 62 | 84 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f+rtG+C+yGd+Ck+ H++ Sp_025860_onex.t2 62 VCNRFLRTGFCPYGDSCKYRHPK 84 6********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 7.7E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 2.04E-14 | 4 | 43 | No hit | No description |
Pfam | PF06220 | 8.0E-9 | 5 | 39 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 15.244 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-8 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-6 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 62 | 84 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-8 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MTVGKYHCDY CDKEFKDTPA ARRRHLQGIQ HHRNRKLWYD SLSLPQDPTG IPAVAQTFGN 60 GVCNRFLRTG FCPYGDSCKY RHPKHNLQGP VTQGQGTSVS LNGLLP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021836091.1 | 3e-69 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_021836092.1 | 3e-69 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 8e-25 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0K9RWV1 | 2e-74 | A0A0K9RWV1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010674530.1 | 2e-47 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-27 | C3H family protein |
Publications ? help Back to Top | |||
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