PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025660_sqcn.t1
Common NameSOVF_025660
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 367aa    MW: 40496.1 Da    PI: 8.8577
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025660_sqcn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-19195249256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++tk+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Sp_025660_sqcn.t1 195 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 249
                        78889************************************************98 PP
2HD-ZIP_I/II127.94.3e-41195284191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        +kk+rl+k+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Sp_025660_sqcn.t1 195 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCEQLTEENRRLQKEVQELR-AL 284
                        69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046189.9E-185157IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.608.0E-19180245IPR009057Homeodomain-like
SuperFamilySSF466897.52E-19183252IPR009057Homeodomain-like
PROSITE profilePS5007117.54191251IPR001356Homeobox domain
SMARTSM003892.2E-16193255IPR001356Homeobox domain
CDDcd000861.76E-15195252No hitNo description
PfamPF000462.6E-16195249IPR001356Homeobox domain
PRINTSPR000314.2E-5222231IPR000047Helix-turn-helix motif
PROSITE patternPS000270226249IPR017970Homeobox, conserved site
PRINTSPR000314.2E-5231247IPR000047Helix-turn-helix motif
PfamPF021836.6E-11251285IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.9E-27251294IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMVAGKEDLG LSLSLGSSNN TSNIASTSGN NNNNNHNLLT PNINQNNNIG FFMNHNNINR  60
VHPHQPHQTT SSNASPLQLN LMMMPSLACP SPSPLLQKLP WNRSTDSFPP SSDRNSDSSR  120
SFLRGIDVNR PAGGDEEDAG VSSPNSTVST VSGKRSSGER DSTTTAGAGD EIEVERASSR  180
GLSDGDDDDG GENSRKKLRL TKDQSAILEE SFKEHNTLNP KQKLALAKRL GLRPRQVEVW  240
FQNRRARTKL KQTEVDCEFL KRCCEQLTEE NRRLQKEVQE LRALKLSPQF YMQMTPPTTL  300
TMCPSCERVA VPTSATTSTT PAQPHPQPQI PDPRPNPSAH HHRTMPVNPW AAAPVPIRSF  360
EALRPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193199SRKKLRL
2243251RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856178.10.0homeobox-leucine zipper protein HAT4-like isoform X2
SwissprotP466011e-104HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A0K9RUY10.0A0A0K9RUY1_SPIOL; Uncharacterized protein
STRINGXP_010677086.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-83Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]