PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_025490_kdjm.t1 | ||||||||
Common Name | SOVF_025490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24932.4 Da PI: 6.1685 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.8 | 1e-26 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ri+n + rqvtf+kRr+g++KKA+ELS+LCdaev +iifsstgk+ye Sp_025490_kdjm.t1 9 ERIDNLTSRQVTFTKRRKGLFKKAKELSILCDAEVGIIIFSSTGKVYEI 57 69*********************************************95 PP | |||||||
2 | K-box | 72.9 | 9.3e-25 | 75 | 169 | 6 | 98 |
K-box 6 gks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++ + +++a+ ++ e++ L++++e L+++ R+llGe+L++Ls+++L+ Le qLe + ++iR +K+e+++++i+el k e ++++en++L+ Sp_025490_kdjm.t1 75 ENQvlNPTSEAQLWKVEAEGLRQQLEDLRKNSRQLLGEELSELSIEHLETLEAQLEMGTRSIRLRKEEIFKNKIQELNKTEIMVHQENMELH 166 44445778999********************************************************************************* PP K-box 96 kkl 98 kk+ Sp_025490_kdjm.t1 167 KKI 169 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.011 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-30 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.36E-37 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 1.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-22 | 82 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.761 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGRGKISIER IDNLTSRQVT FTKRRKGLFK KAKELSILCD AEVGIIIFSS TGKVYEIASH 60 CMQSLLERYY KANEENQVLN PTSEAQLWKV EAEGLRQQLE DLRKNSRQLL GEELSELSIE 120 HLETLEAQLE MGTRSIRLRK EEIFKNKIQE LNKTEIMVHQ ENMELHKKIN LMRQEMVELQ 180 KKNEVSGGQG KDDQEGGGAS SSAASAYDTY DPIELKLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_B | 6e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_C | 6e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_D | 6e-20 | 1 | 77 | 1 | 77 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021717234.1 | 1e-145 | MADS-box transcription factor 23-like isoform X2 | ||||
Refseq | XP_021776241.1 | 1e-145 | MADS-box transcription factor 23-like isoform X2 | ||||
Swissprot | Q6EP49 | 2e-72 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0K9RUZ7 | 1e-157 | A0A0K9RUZ7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010691448.1 | 1e-135 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 5e-61 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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