PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025120_zkzs.t1
Common NameSOVF_025120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92096.6 Da    PI: 6.4176
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025120_zkzs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.5e-191775357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sp_025120_zkzs.t1 17 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                       5679*****************************************************97 PP
2START180.11.3e-561613692205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g++
  Sp_025120_zkzs.t1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNVLPTAnsGTI 251
                        7899******************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++
  Sp_025120_zkzs.t1 252 ELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmptVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 343
                        ***********************************************999889*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++kt++a+l+++++
  Sp_025120_zkzs.t1 344 VLRPLYESSTVIAQKTTMAALRQLRQ 369
                        **********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5481276IPR001356Homeobox domain
SMARTSM003891.3E-151480IPR001356Homeobox domain
CDDcd000861.25E-161777No hitNo description
SuperFamilySSF466895.56E-171780IPR009057Homeodomain-like
PfamPF000461.6E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-181975IPR009057Homeodomain-like
CDDcd146861.65E-669108No hitNo description
PROSITE profilePS5084826.564151366IPR002913START domain
CDDcd088751.04E-78155371No hitNo description
SMARTSM002346.8E-39160370IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-23160367IPR023393START-like domain
SuperFamilySSF559614.94E-38160372No hitNo description
PfamPF018524.3E-54161369IPR002913START domain
PfamPF086706.3E-52694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MMAMSCKDGK GVMDNGKYVR YTPEQVEALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQQ  120
TQKSGVASKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPSW YRDCRAVDVL  240
NVLPTANSGT IELLYMQLYA PTTLAPARDF WLLRYTSVME DGSLVVCERS LNNTQNGPSM  300
PTVQNFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPWS VPEVLRPLYE SSTVIAQKTT  360
MAALRQLRQI AQEVSQPNVS NWGRRPAALR ALSQRLNRGF NEALNGFTDE GWSMIGNDGI  420
DDVTVLVNSS PDKLMALNLT FANGFPAVSN TVLCAKASML LQNVPPAVLL RFLREHRSEW  480
ADNNIDAYLA AAAKISPCSL PGARIGGFGN QVILPLAHTI EHEELLEVIK LEGVVSCPED  540
AMMPRDMFLL QLCSGMDENA IGTCAELIFA PIDASFADDA PLLPSGFRII PLDSVKEASS  600
PNRTLDLASA LEVGPSANRS SSDNSGSGNN MRSVMTIAFQ FAFESHLQDN VASMARQYVR  660
SIISSVQRVA LALSPHLGSQ AGLRSPLGNP EAHTLARWIC QSYRCFLGVE LLKSSGDGSD  720
AVLKSLWHHS DAIMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI LDDHGRKTLC  780
SEFPQILQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFM FMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836126.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0K9RV390.0A0A0K9RV39_SPIOL; Uncharacterized protein
STRINGXP_010691422.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]