PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_024760_amgu.t1 | ||||||||
Common Name | SOVF_024760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | G2-like | ||||||||
Protein Properties | Length: 419aa MW: 47175.5 Da PI: 6.2527 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 245 | 299 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLHe+Fve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Sp_024760_amgu.t1 245 KTRIRWTTELHEKFVECVNLLGGADKATPKAILKLMNSDGLTIFHVKSHLQKYRI 299 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.402 | 242 | 302 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 243 | 300 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-18 | 243 | 299 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-23 | 245 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-9 | 249 | 298 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-20 | 329 | 376 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MSNQKIDFRE QVQQSNGVIN DCMVDLGSRD SQFISVREPW NNMGGCMGGE SQPQNVLPDN 60 LSNGRFGSPV PGFSTAERYV GLPYDHRISS PTFSSQCSKN YDLEYRSFPC SAEGFSAQLG 120 EQDATDLHSR NTVETAAKSL LYGDQSQFYA SGKTYGSPCV NYPDSEHIQQ LKNKLLVDFA 180 NSDGRNYLFP INEKQDFRIL DKSYDSPHGQ FSFSSQGEKQ VIRPLGVMPL NSGNSFTSGA 240 AISSKTRIRW TTELHEKFVE CVNLLGGADK ATPKAILKLM NSDGLTIFHV KSHLQKYRIA 300 KYMPDSTEGK SERRSSLNDV TQIEIKDGVQ LKEALQLQLD VQRRLHEQLE IQRNLQLRIE 360 EQGRQLKMMF DEQQKTRHTL FADQNSDNMS PNGPTFSLDE VQVSSEEGSG CNNFQTKIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 245 | 302 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865284.1 | 0.0 | myb family transcription factor PHL5-like | ||||
Refseq | XP_021865285.1 | 0.0 | myb family transcription factor PHL5-like | ||||
TrEMBL | A0A0K9RV66 | 0.0 | A0A0K9RV66_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672678.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 7e-72 | G2-like family protein |