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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Sp_023860_tzud.t1 | ||||||||
| Common Name | SOVF_023860 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 202aa MW: 23829 Da PI: 4.2203 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 53 | 96 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r+rWT+++ el+++a q+G++ ++ I + ++ gRt++q++ ++ +
Sp_023860_tzud.t1 53 RMRWTKQDTELFYKALSQFGPN-FSMIQQLFP-GRTRNQIRYKYKN 96
89******************77.*********.***********87 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF15963 | 1.1E-22 | 46 | 128 | No hit | No description |
| PROSITE profile | PS51294 | 9.166 | 48 | 102 | IPR017930 | Myb domain |
| SMART | SM00717 | 2.9E-9 | 52 | 100 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 4.19E-11 | 53 | 95 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 5.9E-9 | 53 | 96 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 2.49E-9 | 55 | 96 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 202 aa Download sequence Send to blast |
IEDLPPEDPP YYDDNETYGY DQDGETFDNP STFEVQKDTG YFNYHSFMTK EPRMRWTKQD 60 TELFYKALSQ FGPNFSMIQQ LFPGRTRNQI RYKYKNEDPL RLHDALTSRT QDLSYFKLVI 120 KRLEEQAAQD AKMDKDDSVC ITGEEEGPEE VLNTYDDVVN SKQKEEGGAA DQEPNKRQVE 180 RPPKSYYSEE EEIDWSSYKS EL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021858360.1 | 1e-144 | uncharacterized protein LOC110797543 | ||||
| TrEMBL | A0A0K9RXB8 | 1e-147 | A0A0K9RXB8_SPIOL; Uncharacterized protein (Fragment) | ||||
| STRING | XP_010671339.1 | 1e-76 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G39160.1 | 5e-27 | MYB_related family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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