PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023560_soti.t1
Common NameSOVF_023560
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HB-other
Protein Properties Length: 656aa    MW: 68492.5 Da    PI: 5.6359
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023560_soti.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.43.6e-0632752356
                       SS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
           Homeobox 23 rypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                       + ps+e    LA+k            ++ +qV +WFqNrR+  +
  Sp_023560_soti.t1 32 HVPSREVLMALADKFsnssersgkiTVQMKQVWNWFQNRRYALR 75
                       66777777778877777777777779999***********9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.0051377IPR001356Homeobox domain
SuperFamilySSF466891.92E-81376IPR009057Homeodomain-like
CDDcd000860.001661377No hitNo description
Gene3DG3DSA:1.10.10.605.1E-51477IPR009057Homeodomain-like
PfamPF167191.9E-41126252IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MGRPPTHGAP SFRFFPAEVA QMESLLREHG GHVPSREVLM ALADKFSNSS ERSGKITVQM  60
KQVWNWFQNR RYALRSKLVK APGNLNMPPN PQGEANLMRS VPAVPLQTFV PPGHNVAKNA  120
SENPLMEFEA KSARDGAWYD VQAFHSHRYL ETGNPEVLVR FSGFGPEEDE WVNVRKHVRQ  180
RSLPCESSEC VAVLPGDLIL CFQEGKEQAL YFDAHVLDAQ RRRHDVRGCR CRFLVRYDHD  240
QSEEIVPLRK VCRRPETDYR LQVLHAVNES ASTSVCAESK KPVVDLTSSS TLRVTSPNLS  300
AFAGVSTPII MNAGTSVPHQ VPAPVPTATA TATPTPSPTS VPAPAPPLAS SSVLAPAPAP  360
AVAPAPALGF SSIPAATPAL VSTPVSAPAP ALASAPAPAP APAPVPVPVP VPVPVPDPAL  420
ASTSVAPPAL AKAPTPTPTS TPTSSPIPIS APTPSPTLTG APTPSPSPTL TGAPTPSPPL  480
TCAPTLTCAS TQSPSLTSAT PASSVTCAPT LSPSLTVTPI SVPDSDTAPP SNPTLPPTPA  540
PVLSTIPESE KIESDIPLIP GTSAITQENI MKTDPASQVV EVKKEECCNL ESSMTSAEEM  600
NDDSSVTIPG PEKAQGCVPS EPAISVSTAT TDGGLTVSIK AESNNNLAAS AEDTKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-471262564134SHH1 SAWADEE
4iur_B1e-471262564134SHH1 SAWADEE
4iut_A1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-471262564134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843940.10.0mucin-2-like isoform X1
TrEMBLA0A0K9RVN20.0A0A0K9RVN2_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-120sequence-specific DNA binding transcription factors;sequence-specific DNA binding