PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023520_maiw.t1
Common NameSOVF_023520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 648aa    MW: 73030.9 Da    PI: 4.9178
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023520_maiw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.2e-51111381127
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp GfrF+Ptd el+++yL+ k++gk+ e+  +ikevdi++vePwdLp  +++++ + ew+fF++rd+ky++g+r+nrat++gyWkatgkd+
  Sp_023520_maiw.t1  11 LPLGFRFKPTDVELIDHYLRLKINGKDDEV-ACIKEVDICRVEPWDLPdlSAIRTLDPEWFFFCPRDRKYPNGQRSNRATEAGYWKATGKDR 101
                        699************************999.88**************95447777888********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        +++s+k  l+g+kktLvfy+grapkg++t+Wv+heyr
  Sp_023520_maiw.t1 102 SIKSRKMGLIGMKKTLVFYTGRAPKGQRTNWVIHEYR 138
                        ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-554162IPR003441NAC domain
PROSITE profilePS5100554.23711162IPR003441NAC domain
PfamPF023653.9E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MGALPMPFEA LPLGFRFKPT DVELIDHYLR LKINGKDDEV ACIKEVDICR VEPWDLPDLS  60
AIRTLDPEWF FFCPRDRKYP NGQRSNRATE AGYWKATGKD RSIKSRKMGL IGMKKTLVFY  120
TGRAPKGQRT NWVIHEYRPM IQELDGTHPG QVAFVLCRLF KKAEDLKPDD NEDGYHTEEV  180
ETNIYSPTPT NVSQKDVRSE PMPRKISEYR LDDGSPEDLR SEPAVVQASP VSVEQSVEQQ  240
MTSETFVVKP CDSITSKPVL PDHPRVNKEV VHEVDSYFNE PFNFYDAPDS YYPWQSMHTN  300
QGPIGMDDIF PSEIGDSHNG LHLQDINGKE QISDFMDSVI DPDAPYYKEA VHQGETYIEN  360
DVWKNSSIKE SGSCSGSDVE VAQQKHDVGF IRQNYNEPKG YEELLQSCLL ADDENIFSDD  420
AVDRFINPLS SYPPTLGTGS VKVEDGNQIV GNSGIKIRSN LRGRELPSST FAGQGTANRR  480
MRLQKFQDEE EEESNFTVTE RSCSPTIAPH EDFICLTDLV DNATTAADEI GVVETGIKIR  540
TNLQRTRPSA AKSVEQGTAN RRIRLQKRFT SAAEAEVCKT SVAEIRNSSV EVREKQCADN  600
SEGRPDKNDS KLKKSTPVHM VIKVVVVVFL FMACFGLWIA RSVILLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-411116515171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858555.10.0NAC domain-containing protein 62-like isoform X1
TrEMBLA0A0K9RVY50.0A0A0K9RVY5_SPIOL; Uncharacterized protein
STRINGXP_010671302.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.28e-89NAC 014