PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_023170_ocqo.t1 | ||||||||
Common Name | SOVF_023170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28476.2 Da PI: 9.8703 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.1 | 3.7e-31 | 27 | 76 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyey+ Sp_023170_ocqo.t1 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYA 76 79***********************************************8 PP | |||||||
2 | K-box | 103.7 | 2.3e-34 | 98 | 195 | 8 | 100 |
K-box 8 s.leeakaeslqqelakLkkeienLqreq....RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++ea+a+++qqe+akL+++i++ +++ Rh++Ge+L+sLs+keL++Le++Lek++++iRskKnell+++ie +qk+e el+++n+ L Sp_023170_ocqo.t1 98 GsVAEANAQYYQQEAAKLRNQIRTATENNrllsRHMMGEGLSSLSMKELKNLETKLEKGISRIRSKKNELLFAEIEFMQKREIELHNNNQFL 189 3499********************9966423338********************************************************** PP K-box 95 rkklee 100 r+++ e Sp_023170_ocqo.t1 190 RARISE 195 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.992 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-42 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.07E-32 | 20 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.32E-45 | 20 | 94 | No hit | No description |
PRINTS | PR00404 | 6.0E-33 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-33 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-33 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-23 | 103 | 193 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.906 | 105 | 199 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDFPSQAMEE GSPSSQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 IALIVFSSRG RLYEYANQSV KGTIDRYKKA CSDQTGAGSV AEANAQYYQQ EAAKLRNQIR 120 TATENNRLLS RHMMGEGLSS LSMKELKNLE TKLEKGISRI RSKKNELLFA EIEFMQKREI 180 ELHNNNQFLR ARISENERAQ QSMSLMPPGG SDYDLVPSQS FDSRNYFQVN ALQPNSQYAR 240 QDQTPLQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 5e-21 | 19 | 87 | 1 | 69 | MEF2C |
5f28_B | 5e-21 | 19 | 87 | 1 | 69 | MEF2C |
5f28_C | 5e-21 | 19 | 87 | 1 | 69 | MEF2C |
5f28_D | 5e-21 | 19 | 87 | 1 | 69 | MEF2C |
6byy_A | 6e-21 | 19 | 87 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 6e-21 | 19 | 87 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 6e-21 | 19 | 87 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 6e-21 | 19 | 87 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-21 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY660007 | 0.0 | AY660007.1 Spinacia oleracea C class floral identity transcription factor AGAMOUS mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846001.1 | 0.0 | floral homeotic protein AGAMOUS isoform X2 | ||||
Swissprot | Q40872 | 1e-132 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0K9RVU0 | 0.0 | A0A0K9RVU0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687169.1 | 1e-173 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-100 | MIKC_MADS family protein |