PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_023070_nsgj.t1 | ||||||||
Common Name | SOVF_023070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TALE | ||||||||
Protein Properties | Length: 294aa MW: 33170.2 Da PI: 6.7986 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.3e-08 | 243 | 276 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Sp_023070_nsgj.t1 243 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276 469*****************************87 PP | |||||||
2 | ELK | 25.5 | 3.1e-09 | 197 | 218 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Sp_023070_nsgj.t1 197 ELKIELKQGFKSRIEDVREEIL 218 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-18 | 28 | 72 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.3E-16 | 30 | 71 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.5E-24 | 85 | 140 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.6E-18 | 88 | 139 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 197 | 217 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.629 | 217 | 280 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-11 | 219 | 284 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.23E-16 | 219 | 284 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.84E-11 | 220 | 281 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 224 | 283 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.8E-18 | 237 | 276 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMGGGSGGGG GYGGGLMGGD MAFSDQYRQL KSEIATHPLY EQLLSAHVSC LRVATPIDQL 60 PLIEAQLSQS HNLLRSYASN SQHNHSLSPH ERQDLDNFLA QYLLVLCSFK EQLQNHVRVH 120 AVEAVMACRE IEQNLQNLTG ATLGEGTGAT MSDDEDDLQL EYSMDQSSGG DAHDMMGFGP 180 LLPTESERSL MERVRHELKI ELKQGFKSRI EDVREEILRK RRAGKLPGDT TSVLKAWWQQ 240 HSKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN NSQSANTLKS KRKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 293 | RKRNWHNNSQSANTLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC491448 | 9e-31 | KC491448.1 Salix caprea haplotype 3 putative lignin regulation (Knat7) gene, partial cds. | |||
GenBank | KC491460 | 9e-31 | KC491460.1 Salix herbacea haplotype 3 putative lignin regulation (Knat7) gene, partial cds. | |||
GenBank | KC491461 | 9e-31 | KC491461.1 Salix herbacea haplotype 4 putative lignin regulation (Knat7) gene, partial cds. | |||
GenBank | KC491463 | 9e-31 | KC491463.1 Salix herbacea haplotype 6 putative lignin regulation (Knat7) gene, partial cds. | |||
GenBank | KC491464 | 9e-31 | KC491464.1 Salix herbacea haplotype 7 putative lignin regulation (Knat7) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844481.1 | 0.0 | homeobox protein knotted-1-like 7 | ||||
Swissprot | Q9FPQ8 | 1e-164 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A0K9RVV3 | 0.0 | A0A0K9RVV3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676578.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-154 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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