PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023070_nsgj.t1
Common NameSOVF_023070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 294aa    MW: 33170.2 Da    PI: 6.7986
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023070_nsgj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.3e-082432762154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sp_023070_nsgj.t1 243 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276
                        469*****************************87 PP

2ELK25.53.1e-09197218122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK +L++++++++ ++++E++
  Sp_023070_nsgj.t1 197 ELKIELKQGFKSRIEDVREEIL 218
                        9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-182872IPR005540KNOX1
PfamPF037901.3E-163071IPR005540KNOX1
SMARTSM012569.5E-2485140IPR005541KNOX2
PfamPF037911.6E-1888139IPR005541KNOX2
PROSITE profilePS512139.132197217IPR005539ELK domain
PROSITE profilePS5007111.629217280IPR001356Homeobox domain
SMARTSM003894.3E-11219284IPR001356Homeobox domain
SuperFamilySSF466894.23E-16219284IPR009057Homeodomain-like
CDDcd000865.84E-11220281No hitNo description
Gene3DG3DSA:1.10.10.601.7E-25224283IPR009057Homeodomain-like
PfamPF059209.8E-18237276IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMGGGSGGGG GYGGGLMGGD MAFSDQYRQL KSEIATHPLY EQLLSAHVSC LRVATPIDQL  60
PLIEAQLSQS HNLLRSYASN SQHNHSLSPH ERQDLDNFLA QYLLVLCSFK EQLQNHVRVH  120
AVEAVMACRE IEQNLQNLTG ATLGEGTGAT MSDDEDDLQL EYSMDQSSGG DAHDMMGFGP  180
LLPTESERSL MERVRHELKI ELKQGFKSRI EDVREEILRK RRAGKLPGDT TSVLKAWWQQ  240
HSKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN NSQSANTLKS KRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273293RKRNWHNNSQSANTLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4914489e-31KC491448.1 Salix caprea haplotype 3 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914609e-31KC491460.1 Salix herbacea haplotype 3 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914619e-31KC491461.1 Salix herbacea haplotype 4 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914639e-31KC491463.1 Salix herbacea haplotype 6 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914649e-31KC491464.1 Salix herbacea haplotype 7 putative lignin regulation (Knat7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844481.10.0homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-164KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0K9RVV30.0A0A0K9RVV3_SPIOL; Uncharacterized protein
STRINGXP_010676578.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-154KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]