PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_022850_umkr.t1
Common NameSOVF_022850
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 30797.8 Da    PI: 9.4222
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_022850_umkr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.6e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++ kl+eyss
  Sp_022850_umkr.t1  9 KKIENKINRQVTFSKRRSGLVKKAHEISVLCDAEVALIVFSHREKLFEYSS 59
                       68***********************************************96 PP
2K-box98.87.6e-3380173699
              K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         +s++   + +++ ++akLk+++e L r++Rh+lG++L+sL++keLq+LeqqL+++lk+iRskKn+l++e+i+elqkke+++q +n++L kk
  Sp_022850_umkr.t1  80 LTSNDPDSQVNWSFDFAKLKSRLELLHRNHRHYLGQELDSLNIKELQSLEQQLDTALKNIRSKKNQLMHESISELQKKERAMQVHNNMLAKK 171
                        55555556789********************************************************************************* PP

              K-box  98 le 99 
                        ++
  Sp_022850_umkr.t1 172 IK 173
                        97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.23161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-33291IPR002100Transcription factor, MADS-box
CDDcd002651.24E-37276No hitNo description
PRINTSPR004041.2E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.41488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRGRVQLKK IENKINRQVT FSKRRSGLVK KAHEISVLCD AEVALIVFSH REKLFEYSSD  60
SAMETILEKY ERYSYAERRL TSNDPDSQVN WSFDFAKLKS RLELLHRNHR HYLGQELDSL  120
NIKELQSLEQ QLDTALKNIR SKKNQLMHES ISELQKKERA MQVHNNMLAK KIKDKGKNVV  180
QEVQRSQQMQ WQWQQQQQQP QQQQSLAQNH QGVSDASGFL LPPPPPSFNM GGAYQGEVGG  240
EERRNDLDLT LEPIYSMPND EMLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21190189MEF2C
5f28_B4e-21190189MEF2C
5f28_C4e-21190189MEF2C
5f28_D4e-21190189MEF2C
6byy_A3e-21184183MEF2 CHIMERA
6byy_B3e-21184183MEF2 CHIMERA
6byy_C3e-21184183MEF2 CHIMERA
6byy_D3e-21184183MEF2 CHIMERA
6bz1_A3e-21174173MEF2 CHIMERA
6bz1_B3e-21174173MEF2 CHIMERA
6bz1_C3e-21174173MEF2 CHIMERA
6bz1_D3e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7264840.0EU726484.2 Spinacia oleracea APETALA1-1 (AP1-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836113.10.0truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-116AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0K9RXX80.0A0A0K9RXX8_SPIOL; Uncharacterized protein
STRINGXP_010681126.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]