PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_019820_smzt.t1
Common NameSOVF_019820
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 638aa    MW: 71308.5 Da    PI: 5.475
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_019820_smzt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.7e-24131231198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f kvlt sd++++g +++ +k+a+e+       +  ++ +++l  ed++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF   
  Sp_019820_smzt.t1 131 FSKVLTASDTSTHGGFSVLRKHANEClppldmtQ--QTPTQELAAEDLHGYVWRFKHIFRGQPRRHLLTTGWSHFVTSKRLVAGDSFVFL-- 218
                        88****************************9643..445569************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  Sp_019820_smzt.t1 219 RGERGELRVGVRR 231
                        449999*****98 PP
2Auxin_resp99.16.1e-33257336183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t++ F v+Y+Pr+  s+F+v ++k+++++++ + vGmRfkm+fe+ed +err++Gt+vgv dl+p +W++S+WrsLk
  Sp_019820_smzt.t1 257 ASHAINTNTFFVVYYKPRM--SQFIVGLNKYLESVDNGFKVGMRFKMKFEGEDTPERRFTGTIVGVDDLSP-QWNESRWRSLK 336
                        789***************7..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-38122260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-40125246IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-20129231No hitNo description
SMARTSM010192.9E-21131233IPR003340B3 DNA binding domain
PfamPF023629.7E-22131231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984131233IPR003340B3 DNA binding domain
PfamPF065076.3E-30257336IPR010525Auxin response factor
PfamPF023094.5E-13501615IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-12522603No hitNo description
PROSITE profilePS5174525.783526618IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MANSMAFGQP NLSPAFRDSA GGGDVLYPEL WRACAGPLVE IPRLGERVYY FPQGHMEQLE  60
ASTNEELNQR IHMFNLPTKI LCRVMNILLL AEKETDEVYA QITLMPEADQ TEPRKPDPCQ  120
PEPQRPAIRS FSKVLTASDT STHGGFSVLR KHANECLPPL DMTQQTPTQE LAAEDLHGYV  180
WRFKHIFRGQ PRRHLLTTGW SHFVTSKRLV AGDSFVFLRG ERGELRVGVR RVARQQSSMP  240
SSVISSQSMH LGVLATASHA INTNTFFVVY YKPRMSQFIV GLNKYLESVD NGFKVGMRFK  300
MKFEGEDTPE RRFTGTIVGV DDLSPQWNES RWRSLKVQWD EPTSIARPDR VSPWEIEPFG  360
SSSPSEVIDP VVKTKKPRPT IEIPGHASMS VNDSTPWNSS IDFAQGEIED CKSATAWSIF  420
TGYTTPQSTK QNGDVTENGK KIETTASYRL FGIDLMKTST PTTIEEESMQ ELNGTGGCTE  480
ENGRSLDSPV DSEQKSDLSK VSQEKKQVLP LASPRDMQTK QGSSTRSRTK VQMQGVAVGR  540
AVDLTTLESY AQLIDELEEL FDIKGELQPR AKWEIVFTDD EGDMMLVGDD PWPEFCSMAK  600
KLYICSSQEV KKMSARSKLP ASSLEGDGTV LSMESSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1702436517361Auxin response factor 1
4ldw_A1e-1702436517361Auxin response factor 1
4ldw_B1e-1702436517361Auxin response factor 1
4ldx_A1e-1702436517361Auxin response factor 1
4ldx_B1e-1702436517361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864622.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0K9RYM00.0A0A0K9RYM0_SPIOL; Auxin response factor
STRINGXP_010695583.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9