PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_019230_oihr.t1
Common NameSOVF_019230
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family FAR1
Protein Properties Length: 676aa    MW: 78500.6 Da    PI: 6.6986
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_019230_oihr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.85.6e-2628114191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+l+vk+++dgkw+++++++eHnHel p
  Sp_019230_oihr.t1  28 EFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASLHVKRKQDGKWYMYNFVKEHNHELLP 114
                        6****************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-2428114IPR004330FAR1 DNA binding domain
PfamPF105512.9E-9207252IPR018289MULE transposase domain
PROSITE profilePS509669.557440476IPR007527Zinc finger, SWIM-type
PfamPF044346.7E-5449474IPR007527Zinc finger, SWIM-type
SMARTSM005757.7E-7451478IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MESNFTMASS DLEPREDMEF ESHEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASLH VKRKQDGKWY MYNFVKEHNH ELLPAQAHFF  120
RSHRDLDPLK SDVRMRKRKL LASVSKQFSA YQNVGCLDIL KRSQHAKGRS LSLEAGDAQM  180
LLDLFMQMQE EDPKFFYAVD MNEEHRLRNT WLMAMGGQSP QVVLTDENDA LKTAITELLP  240
DARHYFCLWH MFEKIPKQLE HINIWLDDFV EKFTKCIYRS WTEEQFDKRW SKLLEKFELR  300
DDEWLRSIYE NRIHWVPLFM RGISFAGLST RSRSECLNSF FDKYVNAESS LREFLEQYKL  360
LLCDRYEEEA KAEFDAWHEA PELKSPSPFE KQMSCVYTHE IFKKFQVEVL GAAACHLKKE  420
KEDETGITYT VKDFENNQDF TVEWNESRSE ICCLCRLFEQ HGYLCRHAIV VLQMSGVFSI  480
PSKYILQRWT SAALSRHSIS GKLDEVQAKV RRYNDLCQRA LILAEEGSLS IESYNVAVSA  540
IRDAFQQCGN ANSSFEKDLR HNSCLVYSTN FHEDDTRGTH SRLCDGESDT RMNEASSAPE  600
FGSGDINVNS RGRVPLDRGI PAVGSEQGFT QMETPNTRPA HLHNMFPLPF NNGMPSMYRG  660
IAPGQFHHAT WQEKHL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863920.10.0protein FAR1-RELATED SEQUENCE 4-like isoform X1
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A0K9RX010.0A0A0K9RX01_SPIOL; Uncharacterized protein
STRINGXP_010686028.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]