PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_015250_agko.t1
Common NameSOVF_015250
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 363aa    MW: 39981.7 Da    PI: 7.6129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_015250_agko.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.8e-11294339655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri  ++ +L+el+P+     +k  s +++L +Av++Ik Lq
  Sp_015250_agko.t1 294 SIAERERRTRISGKLKKLQELVPNM----DKQTSYSDMLDLAVQHIKGLQ 339
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.649288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-13291353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-9292343No hitNo description
SMARTSM003534.0E-11294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12294352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MYSSSSSSQQ QQSSSNTQAN PNLMRYDSAP SSLLSNTVDS IIGNHHHQNH NHNHNHNHHH  60
FFNPESTHSK LSSGGGAESS RNTLTLLHQG PYGLSTESSS NNNIHNNNNN NNSNNGMDSP  120
SKTTSNLIRH SSSPAGFLSH LASDIGYSVP KGFDVNYNNN GQGGSSIGHD QHMVSRLGSQ  180
LSFTRKDRNS LSQISEMNES VVEGMSSDHD QRKRSGFSLS AWDDTNDNNF IISTSSNKRG  240
KAINDDILNG LSAIDSQQAM ALEMATMERL MQVPENSVPC KIRAKRGFAT HPRSIAERER  300
RTRISGKLKK LQELVPNMDK QTSYSDMLDL AVQHIKGLQG EIEKLNHDLD HCKCGCKGET  360
MQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861721.10.0transcription factor bHLH129-like
TrEMBLA0A0K9RZX90.0A0A0K9RZX9_SPIOL; Uncharacterized protein
STRINGXP_010666766.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-61bHLH family protein