PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_014080_drcz.t1

Common Name

SOVF_014080

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Trihelix

Protein Properties

Length: 976aa MW: 110149 Da PI: 7.2992

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_014080_drcz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.6	7.8e-09	154	207	21	74
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e Sp_014080_drcz.t1 154 GGRGKTRAEKDREVAEFLNQHGVNRDAKTAGTKWDNMLGEFRKVYEWERGSERE 207 45788999999**************************************86322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.78E-16	768	857	IPR011009	Protein kinase-like domain
CDD	cd00180	3.97E-14	804	960	No hit	No description
Gene3D	G3DSA:1.10.510.10	1.1E-9	807	961	No hit	No description
SuperFamily	SSF56112	2.78E-16	892	959	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MSDKKDEREN SPRIIQKDER ESSSTTPPTQ KIRGPPPPPL FLPPSFDFEP VKRPRYAHQW 60 KQQSPLGLQN PESSPSPSNP QAHLTSPESS SSPSPPVGHD LDPSKNEQKK QQQFRKGKYV 120 SPVWKPHEML WLAKAWRGQY QGGDDGGGGG SSGGGRGKTR AEKDREVAEF LNQHGVNRDA 180 KTAGTKWDNM LGEFRKVYEW ERGSEREQQV VGKSYFRLSP YERKIHRLPA SFDEQVFDEL 240 SQFMGPKMRH SSSSSSLHIN TSSSSSGFVH HHQQHHHLQT SLPPPHPFGR DESYPPPNMF 300 SERTRQMQSY LMNNPRTNPL LGSSLDPHPS SSPLNVGISP TSTTSGGSPR VELRRIGRMR 360 MTWEEWVTLW AEEGEYHNRG RVKIQGSSNL LNADHELFYF DDSMVASSLE AFEDGPLKGF 420 SVDRFVPGQQ LKVFGRRKQP LSPPPSTSSA DFNERIPFAI AAEPSSRWEF QDPTEYYLGC 480 LRSPPTTLPT LFELSWYIQE PPPEEFRLPL RKDIYRDLPH GKDLFFTTTT TTTTSNEPSL 540 DCKSFTIDVL SSLIRSTPSI TAATSSNRDS YISLWDDCIN RVISKFCPFE MVFTRKELKK 600 KQSSSSLECC RDQWPNLTGM VKNLCLWRGE EIDQLRDSQP FIDPSSTITQ KITWTYNDLP 660 YVLGYYAIGH NITFCALSPS SSSPSQITRT NLYSLDLTNP SERVKLLVPC WRIGILLASL 720 AEKCMNNHRH RGSCSDYERI DFGDGNVVEM TAFTVTRYYP CKRSWQSAKE IYSVLDHRVV 780 PHAEHMVSYD EDELTLMFKP RGVKTKPKNT EQLVLALKQV AKALVALHDL SFMHRNLSWE 840 NVLMVLDPGQ SKSMSNGESD QSETECEWFV AGFEEAVGAP QINPYNNRVT AEKVAVGVAP 900 EMGRGVHGVK VDVWGIGCLI KTSEVKSEGL VGKKLKELEE KCMGENPEQR PTAADCYHHL 960 LQIQSSLSSA ASTACC

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MSDKKDEREN SPRIIQKDER ESSSTTPPTQ KIRGPPPPPL FLPPSFDFEP VKRPRYAHQW  60
KQQSPLGLQN PESSPSPSNP QAHLTSPESS SSPSPPVGHD LDPSKNEQKK QQQFRKGKYV  120
SPVWKPHEML WLAKAWRGQY QGGDDGGGGG SSGGGRGKTR AEKDREVAEF LNQHGVNRDA  180
KTAGTKWDNM LGEFRKVYEW ERGSEREQQV VGKSYFRLSP YERKIHRLPA SFDEQVFDEL  240
SQFMGPKMRH SSSSSSLHIN TSSSSSGFVH HHQQHHHLQT SLPPPHPFGR DESYPPPNMF  300
SERTRQMQSY LMNNPRTNPL LGSSLDPHPS SSPLNVGISP TSTTSGGSPR VELRRIGRMR  360
MTWEEWVTLW AEEGEYHNRG RVKIQGSSNL LNADHELFYF DDSMVASSLE AFEDGPLKGF  420
SVDRFVPGQQ LKVFGRRKQP LSPPPSTSSA DFNERIPFAI AAEPSSRWEF QDPTEYYLGC  480
LRSPPTTLPT LFELSWYIQE PPPEEFRLPL RKDIYRDLPH GKDLFFTTTT TTTTSNEPSL  540
DCKSFTIDVL SSLIRSTPSI TAATSSNRDS YISLWDDCIN RVISKFCPFE MVFTRKELKK  600
KQSSSSLECC RDQWPNLTGM VKNLCLWRGE EIDQLRDSQP FIDPSSTITQ KITWTYNDLP  660
YVLGYYAIGH NITFCALSPS SSSPSQITRT NLYSLDLTNP SERVKLLVPC WRIGILLASL  720
AEKCMNNHRH RGSCSDYERI DFGDGNVVEM TAFTVTRYYP CKRSWQSAKE IYSVLDHRVV  780
PHAEHMVSYD EDELTLMFKP RGVKTKPKNT EQLVLALKQV AKALVALHDL SFMHRNLSWE  840
NVLMVLDPGQ SKSMSNGESD QSETECEWFV AGFEEAVGAP QINPYNNRVT AEKVAVGVAP  900
EMGRGVHGVK VDVWGIGCLI KTSEVKSEGL VGKKLKELEE KCMGENPEQR PTAADCYHHL  960
LQIQSSLSSA ASTACC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842276.1	0.0	uncharacterized protein LOC110782433
TrEMBL	A0A0K9S0D9	0.0	A0A0K9S0D9_SPIOL; Uncharacterized protein
STRING	XP_010693644.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein