PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_013380_yujy.t1 | ||||||||
Common Name | SOVF_013380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NF-YB | ||||||||
Protein Properties | Length: 152aa MW: 16824 Da PI: 4.3533 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 50 | 7.2e-16 | 12 | 88 | 3 | 87 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 ++d+ lP a +++i+k++lP + ++++da++++ ec + e++d c+re+++ti+++ +l al lGf +y+e++ + Sp_013380_yujy.t1 12 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCV--------ESNDVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAY 88 6899********************************87........689******************************986544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.6E-28 | 9 | 136 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.54E-27 | 13 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.3E-12 | 15 | 72 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MMEPMDIVGK AKEDASLPKA TMTKIIKEML PPDVRVARDA QDLLIECCVE SNDVCNREEK 60 RTIAPEHVLK ALEVLGFGEY IEEVYAAYEQ HKVETMQDGV RGGGGGKWGN AAEMTEEEAA 120 AEQQRMFAEA RARMNGNVPL PKQSDTDPNP ES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-26 | 13 | 131 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021844005.1 | 1e-109 | protein Dr1 homolog isoform X2 | ||||
Swissprot | P49592 | 4e-81 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0K9RYX9 | 1e-108 | A0A0K9RYX9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010669512.1 | 1e-88 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 2e-62 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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