PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_013180_akjt.t1

Common Name

SOVF_013180

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HB-other

Protein Properties

Length: 1191aa MW: 133210 Da PI: 7.0365

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_013180_akjt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.7	3.5e-12	47	96	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le+lF +++p++++ e+ A+ lgLt +qV+ WF rR ++k+ Sp_013180_akjt.t1 47 TPLQLQTLENLFSDDKNPTQSRLEDYASALGLTCEQVRRWFIERRRRDKQ 96 899********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.1E-10	40	101	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	45	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.35E-11	45	101	IPR009057	Homeodomain-like
CDD	cd00086	7.58E-4	45	87	No hit	No description
PROSITE profile	PS50071	13.248	47	97	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-9	47	96	IPR001356	Homeobox domain
PROSITE profile	PS50827	12.15	414	473	IPR018501	DDT domain
SMART	SM00571	1.5E-6	414	473	IPR018501	DDT domain
Pfam	PF02791	9.1E-9	419	470	IPR018501	DDT domain
Pfam	PF15612	2.0E-5	689	728	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-12	818	891	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1191 aa Download sequence Send to blast
MATTHLLRHY HGPLTISPTT SLTDFVINNN NGDDNDDDVG FNLLRKTPLQ LQTLENLFSD 60 DKNPTQSRLE DYASALGLTC EQVRRWFIER RRRDKQDAAR NIQGGNGSAQ RTDKGKSKMK 120 KKKNLSSLEP GEHGSCTRKP GLVQDMLYSP DYIFMKIFRK DGPPLGVEFD PLPDTVFQGS 180 NGIAGSRCCE AASQGEQRAF KRRKVTKSSV LDTEQCSRMK IPMKKHGKGK GLMSVLQLVN 240 SHAPFRDNDG ALKRGKMLPR KNSQPGKRHG MGKGFMTASQ LANPDSKRRT QRRKPTAVRR 300 SGNKVQEKKK PPPRRKKVES IQKEIQKAQR NCCKIALDLS RYDENLCSFS AKADDEELEL 360 RELQAGPNPL TCGGHFANVG NGCCSLCKGL LPKFPPDALR MRKPLCMHPW NSSLELEKKL 420 FKVFHFLYTY AAILDLCPFN LDEFAEAFCD KDSSLLGKLH VCLLGLLLSD IQKEISYGTS 480 IHSNKNGMFL NLLRMAGTQD YAVNLWKTSL NPLTWTEILR QILVTAGFGS KDSNQSKGCL 540 PKESDHMARC GFHPDTLKGT LFSILFEQKN KGMKVNELAK YSQIVDLNLE KTDDELEDSI 600 CSILASDITL FEKISSSTYR LRLTSIMKKD EDTLSDNDDN GSIDDGSRSF HSTNAECDSG 660 ISSSRPDMGH QYPENNPSSL SSVIDESHPG ESWLLGLMEG EYSDLSIEEK LNTLLALVDL 720 VSAGSSIKME DPSAAIADCV PRTYQHGSGG KIKRSTVQRP SLHISSCGDD RENGRFSSAF 780 YAVDSSVVLS MMSEECRYSG KKKGSNGAGN GDDLHPIQSI FLGSDRRYNR YWLFLGPCDA 840 DDPGHKRVYV ESSDDGQWQV IDSEEALCDL LDSLNDQGRR EAVLLASLEK RMPFLVEEML 900 SRIPIDISGS QSAQSGLSEI DRINEDSPSP ISDIDNLSLG ETLFNAVTSS DAAPFIVGKK 960 AEQQKQKYER LQAYDSWIWN DFYSILHAVK HGKRSFFDSW TRCGSCNDLY WRDERHCKTC 1020 HTTFELDLDL EEKYAIHVAT CHAPEDADIC PMHKVLPSKL QALKAAIHVI ELIMPESALI 1080 GGWKKSAYKL WVRRLRRTSS LHEFLQVLGD FVGSLNVDWV SQFTATHKCK YTIEDFVAEF 1140 QTMPQTSSAV ALWLVKLDAM IALQLDEKIV ETAKGQNLVA APVMVSVDDD D

Sequence ? help Back to Top

Protein Sequence Length: 1191 aa Download sequence Send to blast

MATTHLLRHY HGPLTISPTT SLTDFVINNN NGDDNDDDVG FNLLRKTPLQ LQTLENLFSD  60
DKNPTQSRLE DYASALGLTC EQVRRWFIER RRRDKQDAAR NIQGGNGSAQ RTDKGKSKMK  120
KKKNLSSLEP GEHGSCTRKP GLVQDMLYSP DYIFMKIFRK DGPPLGVEFD PLPDTVFQGS  180
NGIAGSRCCE AASQGEQRAF KRRKVTKSSV LDTEQCSRMK IPMKKHGKGK GLMSVLQLVN  240
SHAPFRDNDG ALKRGKMLPR KNSQPGKRHG MGKGFMTASQ LANPDSKRRT QRRKPTAVRR  300
SGNKVQEKKK PPPRRKKVES IQKEIQKAQR NCCKIALDLS RYDENLCSFS AKADDEELEL  360
RELQAGPNPL TCGGHFANVG NGCCSLCKGL LPKFPPDALR MRKPLCMHPW NSSLELEKKL  420
FKVFHFLYTY AAILDLCPFN LDEFAEAFCD KDSSLLGKLH VCLLGLLLSD IQKEISYGTS  480
IHSNKNGMFL NLLRMAGTQD YAVNLWKTSL NPLTWTEILR QILVTAGFGS KDSNQSKGCL  540
PKESDHMARC GFHPDTLKGT LFSILFEQKN KGMKVNELAK YSQIVDLNLE KTDDELEDSI  600
CSILASDITL FEKISSSTYR LRLTSIMKKD EDTLSDNDDN GSIDDGSRSF HSTNAECDSG  660
ISSSRPDMGH QYPENNPSSL SSVIDESHPG ESWLLGLMEG EYSDLSIEEK LNTLLALVDL  720
VSAGSSIKME DPSAAIADCV PRTYQHGSGG KIKRSTVQRP SLHISSCGDD RENGRFSSAF  780
YAVDSSVVLS MMSEECRYSG KKKGSNGAGN GDDLHPIQSI FLGSDRRYNR YWLFLGPCDA  840
DDPGHKRVYV ESSDDGQWQV IDSEEALCDL LDSLNDQGRR EAVLLASLEK RMPFLVEEML  900
SRIPIDISGS QSAQSGLSEI DRINEDSPSP ISDIDNLSLG ETLFNAVTSS DAAPFIVGKK  960
AEQQKQKYER LQAYDSWIWN DFYSILHAVK HGKRSFFDSW TRCGSCNDLY WRDERHCKTC  1020
HTTFELDLDL EEKYAIHVAT CHAPEDADIC PMHKVLPSKL QALKAAIHVI ELIMPESALI  1080
GGWKKSAYKL WVRRLRRTSS LHEFLQVLGD FVGSLNVDWV SQFTATHKCK YTIEDFVAEF  1140
QTMPQTSSAV ALWLVKLDAM IALQLDEKIV ETAKGQNLVA APVMVSVDDD D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	93	ERRRRD
2	89	94	RRRRDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021866725.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A0K9RYZ9	0.0	A0A0K9RYZ9_SPIOL; Uncharacterized protein
STRING	XP_010694636.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator