PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_012420_kmmx.t1 | ||||||||
Common Name | SOVF_012420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 41879.4 Da PI: 7.3014 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.7e-53 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+d Sp_012420_kmmx.t1 10 VPPGFRFHPTDEELLHYYLKKKISFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRD 100 69****************************.99**************963433332556********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 k + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Sp_012420_kmmx.t1 101 KCIRN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139 ****9.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-58 | 9 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.892 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-28 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGSPASNGGV PPGFRFHPTD EELLHYYLKK KISFQKFDME VIREVDLNKM EPWELQERCR 60 IGSTPQNEWY FFSHKDRKYP TGSRTNRATN AGFWKATGRD KCIRNTFKKI GMRKTLVFYR 120 GRAPHGQKTD WIMHEYRLED THDPQANGED GWVICRVFKK KNLFKIGGDQ IGGGGTTTSA 180 TSDQLLCNPS GSSNGNQSRL FIPRDHTNNN SHSQYPHHLL LRNDPQTTST FDLYMNKPDL 240 GLHSYPHSHQ IGPLHPPPDQ YPTHHLYQAP TDCDGGGGGG GGGGVPTALE VTVCEPSDPH 300 HHHHHQAGIN EWAMLDRVIG HQQDDHPDTT ANNDLTSTVL EMNQQQQQQQ QQHQQLSLRG 360 EMDFWGYAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 4 | 162 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 4 | 162 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 4 | 162 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 4 | 162 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-51 | 4 | 162 | 14 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 4 | 162 | 11 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 4 | 162 | 11 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021852461.1 | 0.0 | protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 1e-129 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0K9S0Z7 | 0.0 | A0A0K9S0Z7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010688726.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-125 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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