PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_011330_gdsx.t1 | ||||||||
Common Name | SOVF_011330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | ERF | ||||||||
Protein Properties | Length: 349aa MW: 38296.8 Da PI: 8.1813 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 181 | 231 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +l+g Sp_011330_gdsx.t1 181 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTYDTAIEAARAYDRAAFRLRG 231 7********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 180 | 240 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-37 | 181 | 245 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-30 | 181 | 239 | No hit | No description |
SuperFamily | SSF54171 | 5.3E-23 | 181 | 241 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-14 | 181 | 231 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.711 | 181 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-13 | 182 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-13 | 221 | 241 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MASCDESSAL DFIKSHLFSE LSPIGVNFSF NNNNFVNNGL NFDLNQSNIA KPESSIGKSN 60 SLSSQNSLSS QNSFSTSYFT GQQEMDSSSN LIKEEKAADF DFDFDFDVDF SKFETKEMST 120 PSPTFSGGSK SKFRERKPAM MKIAVPAPAK KFEVVEFVSE LTQKASNELA QKVEKQEAQR 180 HYRGVRRRPW GKYAAEIRDP NKRGSRVWLG TYDTAIEAAR AYDRAAFRLR GSKAILNFPL 240 EVGKLVEEAA ATAATAATTG ASSEGGNGGR KRKAVEETKK EVVVVTKKVK SEESSTTSCL 300 VDESFPLTPS SWTAFWDLDV KSGNGLFTVP PLSPLSPHPS IGYSQMAVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-29 | 180 | 242 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856090.1 | 0.0 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A0K9RZH7 | 0.0 | A0A0K9RZH7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677102.1 | 1e-91 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-33 | ERF family protein |