PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_010720_zxac.t2

Common Name

SOVF_010720

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 1184aa MW: 131819 Da PI: 9.4138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_010720_zxac.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.8e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE +++++ +++G++ Wk++a+ + +R+ +++ Sp_010720_zxac.t2 46 QWSKEELQRFYESYRKYGKD-WKKVAASVR-NRSMEMV 81 5***************99.*****.98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-10	42	90	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-4	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-7	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-5	46	81	IPR009057	Homeodomain-like
CDD	cd00167	4.39E-6	47	81	No hit	No description
SMART	SM01135	8.3E-57	644	745	IPR033471	DIRP domain
Pfam	PF06584	2.5E-31	644	744	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1184 aa Download sequence Send to blast
MAPTRKSRSV NKRFTYPNEI SPIKDGDSAN KNNKRKRKVS DMLGAQWSKE ELQRFYESYR 60 KYGKDWKKVA ASVRNRSMEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEGSDS 120 EQESNDGVGI PRKPHKRTRG KVQPNPARNL SDVPQSQSVA SSYGCLSLLK KKRSGGNQPR 180 AVGKRTPRIP VRYTYDKDSI GRYISPVQQG PKSKLDADDD DVAHEVALAL AEASHRGGSP 240 QVSQTPNKRR ATASKSPGGL GERVCSESEM TSAKNAGNEV DDDGCEGSLG STEEENNFSR 300 VKPHSGGRQG AGSFIQQKAK KSYEKKVEVE DTRHKYGDDI KEACSGTEGG QRFSSFDLKL 360 GSESGDVTFP RSSGQASKKR SKKVLFGGDE GVALDALQAL ADLSFMMPSS TAEAESTALL 420 KEEKERDFDK YRPQDTIPSS QRGKPKASPS KKRGDHLVLD TQVSESKQIK PGKASVTGST 480 PGAVKKDLLL RKRKPKPSVS KNVTSEVQMD AGANVVQENE VSDQGIKSVN KSRRVSNHAS 540 QQQLGHLVRI SEHSSSSTDI RRDGDDSAVS SVHASETTKA NGSTKSRARR KVDKSQIHRS 600 DIFVNEQPNK SGQPYHDKTV YLKENLCSCL LNHRVRRWCV YEWFYSAIDY PWFAKSEFVE 660 YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSQQFLKEEK EKLNYYRESV RSHYTELRMG 720 KREGLPTDLA RPLTVGQRVI SIHPRSREIH NGNVLTVDHN RCRIQFDRPE LGVEFVKDID 780 CMPLNPVENM PTSLQRHNVA FDKFYEALKQ FKVDRPEDRM KEEITKLTQG QKGENAEGTS 840 NVAPFYLMTN LSKQAKEGFV SPSLHEKVGH SDVMSPQQAL TQQSALSQLQ AKEADIRALA 900 ELSRALDKKN ALVTELKRMN DDVYEDMSLK DVDSFKKQYA AVLVQLNEVL DQVSSALMCL 960 RQRNTYQGNS LVPWQKTKAS LDDHGSIVSS LNCLPCDSQG AGSHVCEIVD TSVIKARKMV 1020 DAAVQAVSSL NAAADSIQKI EEVVDFLNNR LLVDDSRMSV QTTQLTGSST RQNQPSPCTL 1080 NVVASQQALD SRSNGAVAQC EAQIPSELVA NCVATLLMIQ VSLENCLSIS YIWQNMPGLQ 1140 VQHILLNLWT SALMTCWIYD EFIVTYSFRF ATLAFSRSLM HLVV

Sequence ? help Back to Top

Protein Sequence Length: 1184 aa Download sequence Send to blast

MAPTRKSRSV NKRFTYPNEI SPIKDGDSAN KNNKRKRKVS DMLGAQWSKE ELQRFYESYR  60
KYGKDWKKVA ASVRNRSMEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEGSDS  120
EQESNDGVGI PRKPHKRTRG KVQPNPARNL SDVPQSQSVA SSYGCLSLLK KKRSGGNQPR  180
AVGKRTPRIP VRYTYDKDSI GRYISPVQQG PKSKLDADDD DVAHEVALAL AEASHRGGSP  240
QVSQTPNKRR ATASKSPGGL GERVCSESEM TSAKNAGNEV DDDGCEGSLG STEEENNFSR  300
VKPHSGGRQG AGSFIQQKAK KSYEKKVEVE DTRHKYGDDI KEACSGTEGG QRFSSFDLKL  360
GSESGDVTFP RSSGQASKKR SKKVLFGGDE GVALDALQAL ADLSFMMPSS TAEAESTALL  420
KEEKERDFDK YRPQDTIPSS QRGKPKASPS KKRGDHLVLD TQVSESKQIK PGKASVTGST  480
PGAVKKDLLL RKRKPKPSVS KNVTSEVQMD AGANVVQENE VSDQGIKSVN KSRRVSNHAS  540
QQQLGHLVRI SEHSSSSTDI RRDGDDSAVS SVHASETTKA NGSTKSRARR KVDKSQIHRS  600
DIFVNEQPNK SGQPYHDKTV YLKENLCSCL LNHRVRRWCV YEWFYSAIDY PWFAKSEFVE  660
YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSQQFLKEEK EKLNYYRESV RSHYTELRMG  720
KREGLPTDLA RPLTVGQRVI SIHPRSREIH NGNVLTVDHN RCRIQFDRPE LGVEFVKDID  780
CMPLNPVENM PTSLQRHNVA FDKFYEALKQ FKVDRPEDRM KEEITKLTQG QKGENAEGTS  840
NVAPFYLMTN LSKQAKEGFV SPSLHEKVGH SDVMSPQQAL TQQSALSQLQ AKEADIRALA  900
ELSRALDKKN ALVTELKRMN DDVYEDMSLK DVDSFKKQYA AVLVQLNEVL DQVSSALMCL  960
RQRNTYQGNS LVPWQKTKAS LDDHGSIVSS LNCLPCDSQG AGSHVCEIVD TSVIKARKMV  1020
DAAVQAVSSL NAAADSIQKI EEVVDFLNNR LLVDDSRMSV QTTQLTGSST RQNQPSPCTL  1080
NVVASQQALD SRSNGAVAQC EAQIPSELVA NCVATLLMIQ VSLENCLSIS YIWQNMPGLQ  1140
VQHILLNLWT SALMTCWIYD EFIVTYSFRF ATLAFSRSLM HLVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	494	LRKRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862141.1	0.0	protein ALWAYS EARLY 3 isoform X2
TrEMBL	A0A0K9RZQ3	0.0	A0A0K9RZQ3_SPIOL; Uncharacterized protein
STRING	XP_010667784.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding