PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_009860_gype.t1

Common Name

SOVF_009860

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRAS

Protein Properties

Length: 789aa MW: 88887.1 Da PI: 6.2889

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_009860_gype.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	380.4	2.2e-116	411	782	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL cA+av s+d+++a+ lL ++++ +sp+gd +qRla+yf+ +L+arla+ ++ +y+ l + ++s ++ l a+++f v+P+ k Sp_009860_gype.t1 411 LRSLLSLCAQAVGSNDQRNANDLLRQIRQYSSPTGDGNQRLAHYFADGLEARLAGVGTPIYSCLLTGPAS---AIDILRAYHMFLAVCPFKK 499 578999*****************************************************999999988...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 ++++ +N+aI e +e+++++HiiD++i +G+QWp+L+q L+sRp+gpp++RiTgv++p++g ++++eetg+rL+++Ae++g++fefn+ + Sp_009860_gype.t1 500 MGNFFCNRAITEVAEKATQLHIIDIGIVYGFQWPCLFQRLSSRPGGPPKIRITGVDNPQPGfrPAKRVEETGRRLKNYAESFGITFEFNA-I 590 **************************************************************************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ak++e+l++e+L+++++E+l+Vn++++ +++++e++ +e +rd vL+l+k+++P++++ + ns+ F +rf eal ++s+lfd le++ Sp_009860_gype.t1 591 AKKWETLTVEDLKIDSDEVLVVNSMFRFKYVPEETAMVECPRDMVLNLIKQIKPEIFIQGVVNGAFNSPFFITRFREALFHFSTLFDLLETN 682 **************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 lpr+ eer+ +Ere++gr+++nv+aceg er+er et+++W+ r e+aGF+++pl+ ++ + ak ++ v+ + y+++e+ ++l++gWk+r Sp_009860_gype.t1 683 LPRDIEERVLIEREIFGRQAMNVIACEGLERIERPETYKQWQVRNERAGFRQLPLNPETLNMAKKRVKSVYHKDYSIDEDGHWLLQGWKGRI 774 *******************************************************************888************** PP GRAS 367 LvsvSaWr 374 +++++ W+ Sp_009860_gype.t1 775 VYALTTWK 782 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.947	385	762	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-114	411	782	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MDPQLEELYG TLHRIKFSDQ KVPILASNNL VNTSKLHNSN LNLSFENPSL IPPNPNLNVV 60 LPSVGQGQDT ESSLHEDYDF SDAVLKYITQ VLMEEDEEEK TRLYHEPSAL EATEKTLYDV 120 LGEQYPSPQN QYNLPHIKHD NWKVNGVSSF VTDAYSGASS SSSFIDPNWS VYPYGYNPLP 180 IVDFSVPSPN LSLQTSFSSS NRPSSNLSLQ TSYSSSNYSG GQYDVMQLNH YESPFNLASN 240 AIGLVDATAE SPVSALSVSE IFNDSQSMLQ FHKGIEEANK FLPKFILSKD LMNRSSSSRD 300 SVVKLENVHK NEIPAEVLGG TKHRNRDELQ SEERRGNKQS AVSHVSDEAV MRSEMFDKVL 360 LCSGGKNDAD LREVLQSGLN KNAQNGQPKG SGSGGRGRGR RQGSRREVID LRSLLSLCAQ 420 AVGSNDQRNA NDLLRQIRQY SSPTGDGNQR LAHYFADGLE ARLAGVGTPI YSCLLTGPAS 480 AIDILRAYHM FLAVCPFKKM GNFFCNRAIT EVAEKATQLH IIDIGIVYGF QWPCLFQRLS 540 SRPGGPPKIR ITGVDNPQPG FRPAKRVEET GRRLKNYAES FGITFEFNAI AKKWETLTVE 600 DLKIDSDEVL VVNSMFRFKY VPEETAMVEC PRDMVLNLIK QIKPEIFIQG VVNGAFNSPF 660 FITRFREALF HFSTLFDLLE TNLPRDIEER VLIEREIFGR QAMNVIACEG LERIERPETY 720 KQWQVRNERA GFRQLPLNPE TLNMAKKRVK SVYHKDYSID EDGHWLLQGW KGRIVYALTT 780 WKPVYEEPS

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MDPQLEELYG TLHRIKFSDQ KVPILASNNL VNTSKLHNSN LNLSFENPSL IPPNPNLNVV  60
LPSVGQGQDT ESSLHEDYDF SDAVLKYITQ VLMEEDEEEK TRLYHEPSAL EATEKTLYDV  120
LGEQYPSPQN QYNLPHIKHD NWKVNGVSSF VTDAYSGASS SSSFIDPNWS VYPYGYNPLP  180
IVDFSVPSPN LSLQTSFSSS NRPSSNLSLQ TSYSSSNYSG GQYDVMQLNH YESPFNLASN  240
AIGLVDATAE SPVSALSVSE IFNDSQSMLQ FHKGIEEANK FLPKFILSKD LMNRSSSSRD  300
SVVKLENVHK NEIPAEVLGG TKHRNRDELQ SEERRGNKQS AVSHVSDEAV MRSEMFDKVL  360
LCSGGKNDAD LREVLQSGLN KNAQNGQPKG SGSGGRGRGR RQGSRREVID LRSLLSLCAQ  420
AVGSNDQRNA NDLLRQIRQY SSPTGDGNQR LAHYFADGLE ARLAGVGTPI YSCLLTGPAS  480
AIDILRAYHM FLAVCPFKKM GNFFCNRAIT EVAEKATQLH IIDIGIVYGF QWPCLFQRLS  540
SRPGGPPKIR ITGVDNPQPG FRPAKRVEET GRRLKNYAES FGITFEFNAI AKKWETLTVE  600
DLKIDSDEVL VVNSMFRFKY VPEETAMVEC PRDMVLNLIK QIKPEIFIQG VVNGAFNSPF  660
FITRFREALF HFSTLFDLLE TNLPRDIEER VLIEREIFGR QAMNVIACEG LERIERPETY  720
KQWQVRNERA GFRQLPLNPE TLNMAKKRVK SVYHKDYSID EDGHWLLQGW KGRIVYALTT  780
WKPVYEEPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-52	411	782	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	397	404	RGRRQGSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855466.1	0.0	scarecrow-like protein 33
Refseq	XP_021855467.1	0.0	scarecrow-like protein 33
TrEMBL	A0A0K9RZZ5	0.0	A0A0K9RZZ5_SPIOL; Uncharacterized protein
STRING	XP_010690788.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-177	SCARECROW-like 14