PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_008660_oskq.t2
Common NameSOVF_008660
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 308aa    MW: 34330.2 Da    PI: 4.6289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_008660_oskq.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-08180231255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        r+ +  +E rRR  + ++ + L+ llP+ +   ++k+ +  +i++ ++ +Ik+Lq
  Sp_008660_oskq.t2 180 RERARGAESRRRYIVSQRVQALQALLPPaL---KDKRGNQESIVQDVIGHIKYLQ 231
                        5566779*********************55...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-6176240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.287178230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-8179240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.11E-7180235No hitNo description
PfamPF000101.5E-5180231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0047180236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVYSEPFTGA NYNNGSLPPF PVYQTSDMME SQCWYGDTSL AASGLSEVQM NATYDVTENT  60
QTDALAGIFN QNPLPPLIHH MESKNYDSSV ERSGLTFYGP QERSRNGGLD NLVQLSQWMP  120
KEEPISFMDT DCQYAEQSPA FPVQPVNVNN TPVYLSALKG EADTSDVAPE TLRSETRTNR  180
ERARGAESRR RYIVSQRVQA LQALLPPALK DKRGNQESIV QDVIGHIKYL QLQLKELSRS  240
RLGGDSSSGP SKFNEGQQPH EQLFVESLEE NLESLLQENP AEAHKLFESK GLYAVPMAFS  300
NALLCNKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866384.10.0uncharacterized protein LOC110805086 isoform X1
RefseqXP_021866385.10.0uncharacterized protein LOC110805086 isoform X1
TrEMBLA0A0K9S1X50.0A0A0K9S1X5_SPIOL; Uncharacterized protein