PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_008660_oskq.t1 | ||||||||
Common Name | SOVF_008660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 307aa MW: 34202.1 Da PI: 4.6289 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25 | 3.3e-08 | 179 | 230 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+ + +E rRR + ++ + L+ llP+ + ++k+ + +i++ ++ +Ik+Lq Sp_008660_oskq.t1 179 RERARGAESRRRYIVSQRVQALQALLPPaL---KDKRGNQESIVQDVIGHIKYLQ 230 5566779*********************55...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-6 | 175 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.287 | 177 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-8 | 178 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.67E-7 | 179 | 234 | No hit | No description |
Pfam | PF00010 | 1.5E-5 | 179 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0047 | 179 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVYSEPFTGA NYNNGSLPPF PVYQTSDMME SQCWYGDTSL AASGLSEVQM NATYDVTENT 60 QTDALAGIFN QNPLPPLIHH MESKNYDSSV ERSGLTFYGP QERSRNGGLD NLVLSQWMPK 120 EEPISFMDTD CQYAEQSPAF PVQPVNVNNT PVYLSALKGE ADTSDVAPET LRSETRTNRE 180 RARGAESRRR YIVSQRVQAL QALLPPALKD KRGNQESIVQ DVIGHIKYLQ LQLKELSRSR 240 LGGDSSSGPS KFNEGQQPHE QLFVESLEEN LESLLQENPA EAHKLFESKG LYAVPMAFSN 300 ALLCNKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021866386.1 | 0.0 | uncharacterized protein LOC110805086 isoform X2 | ||||
TrEMBL | A0A0K9S0F1 | 0.0 | A0A0K9S0F1_SPIOL; Uncharacterized protein |