PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_008480_ejxe.t1 | ||||||||
Common Name | SOVF_008480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | TALE | ||||||||
Protein Properties | Length: 711aa MW: 77989.6 Da PI: 8.0048 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.2 | 1.6e-09 | 421 | 458 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Sp_008480_ejxe.t1 421 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 458 554459******************************88 PP | |||||||
2 | BELL | 118.5 | 3e-38 | 280 | 351 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+++l+eV++rY+qy+ q+q+v+ssFe++ag gsak+YtslAlk+iS++FrcLkd i++qi Sp_008480_ejxe.t1 280 QRQELQMKKAKLINMLDEVEQRYRQYNSQMQVVVSSFEQAAGNGSAKLYTSLALKTISKQFRCLKDTIMSQI 351 69*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.4E-55 | 186 | 349 | IPR006563 | POX domain |
Pfam | PF07526 | 3.2E-47 | 191 | 347 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.244 | 399 | 462 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 402 | 466 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.47E-12 | 402 | 463 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-17 | 403 | 468 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-29 | 405 | 468 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-18 | 419 | 458 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MMATYFHGGS EIQAAGGDHN LQTLYLMNPN FISAYSEAQT PPNMLFLNPP NALSQGNLSH 60 APPSQQQQFI GIPLSAAGGP HPSDDHSRPS PSSSGSQQLQ HQHHHHHHNQ IPAALHGVSV 120 SRVHPNLWSP NHPGPIQSTA SGPDMAEQMG FRRPMTAQGL SLSLSPGQQQ NQSQVTLAGV 180 SSTSLAASSG VIFGSKYLKA AQEVLEEVVN VGTNNGNNNG DNRIGESSGA HKEKAKAVTA 240 TTREQSSVGE VASRGGNGGG EGESSISGGS KKVAELSTAQ RQELQMKKAK LINMLDEVEQ 300 RYRQYNSQMQ VVVSSFEQAA GNGSAKLYTS LALKTISKQF RCLKDTIMSQ IKGTRKSLGE 360 EDSNSNGVKL ESGAGSRLRF VDHQLRQQRA LQQLGMMQQN AWRPQRGLPE RAVSVLRAWL 420 FEHFLHPYPK DSDKHMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYLE EVKTQEQKSG 480 NSEDNTTSAN KNNKSPKNIN DQSTTKESVM EQQQQHEADH TTNDMISNLS AMSTTSSQGF 540 TLIGSSSDME SLMARSPKKQ RSNSEMQNSP SSILSMDMEL KPVDHHHQRH SFMMTNHEDA 600 GTGFNPYLVN DMTGRFNPDQ MNSHPYHGNG VSLTLGLPHC ENLSLGNHQQ NFIPNQGIQL 660 GRRLDIGSGD HPDFCGISMA QPSHPNNGFQ TIDIQTRKRF AAHQLLHDFV A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 408 | 466 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 408 | 466 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021857854.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0K9S0H6 | 0.0 | A0A0K9S0H6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685441.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-111 | BEL1-like homeodomain 1 |