PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_005860_fgmk.t1
Common NameSOVF_005860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 189aa    MW: 21265.1 Da    PI: 7.0291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_005860_fgmk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18755254
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                       +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Sp_005860_fgmk.t1  7 RFRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLMC 55
                       69******9.**********8.....556**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-34666No hitNo description
SMARTSM003803.1E-40770IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20766IPR016177DNA-binding domain
PROSITE profilePS5103220.784764IPR001471AP2/ERF domain
PfamPF008472.7E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-33764IPR001471AP2/ERF domain
PRINTSPR003679.9E-11819IPR001471AP2/ERF domain
PRINTSPR003679.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAP QTSSSKLLSA TLTAKLHRCY MASLQVTKNS AMQAQQRGPG PQFSGTGNVV  120
GPKFGETCAW SPEYGSTDGL VLPNPEPNWT MKVENAQLEP QCHFTMLEDD HIEQMIEELL  180
DYGSIEIAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-17671470ATERF1
3gcc_A8e-17671470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859261.11e-142ethylene-responsive transcription factor ERF003
SwissprotQ94AW54e-72ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0K9S1F41e-141A0A0K9S1F4_SPIOL; Uncharacterized protein
STRINGXP_010665840.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]