PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_004880_jgpp.t1

Common Name

SOVF_004880

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TCP

Protein Properties

Length: 288aa MW: 31607.9 Da PI: 7.1464

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_004880_jgpp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.3	9.3e-37	57	139	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 ++k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq+++ai ++tgt++ +a++ ++ss+s++ Sp_004880_jgpp.t1 57 PPKRKSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEEAIVAATGTGTMPATFLsGSGSSVSEQR 139 689*************************************************************9999977743333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.1E-32	62	189	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.141	63	117	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MATFLNQQQQ LQQTSPYLDF KEESQIVIPN SNSNSNSNHL ISTNLDENSP IIKKQNPPKR 60 KSNKDRHKKV DGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQS EEAIVAATGT 120 GTMPATFLSG SGSSVSEQRC SVSSGIVSGF SGGLSLINGN LGRTHFQTGS WGYGSGSVHE 180 PGFSSSNSSL MRESLDSRHK MGVQAMGMSN LNMGLMNFGQ QQQQLQERDN LELGLSQENA 240 GFSGLNYGAI NQMYQQFRQN REEAGFGIDQ QENFFDDGDS QSSKLSGI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021845872.1	0.0	transcription factor TCP20-like
TrEMBL	A0A0K9S1K9	0.0	A0A0K9S1K9_SPIOL; Uncharacterized protein
STRING	XP_010682712.1	1e-113	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-40	TCP family protein