PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_004120_qwyi.t1
Common NameSOVF_004120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 407aa    MW: 45377.9 Da    PI: 4.5468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_004120_qwyi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-15203245145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++ W++eEd  l++ + + G++ W+ Ia++++ gRt++++k++w+
  Sp_004120_qwyi.t1 203 KDVWSEEEDRVLIESHIEIGNK-WAEIAKKLP-GRTENSIKNHWN 245
                        578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.667198252IPR017930Myb domain
SuperFamilySSF466891.08E-15198255IPR009057Homeodomain-like
SMARTSM007171.5E-14202250IPR001005SANT/Myb domain
PfamPF002491.2E-13203245IPR001005SANT/Myb domain
CDDcd001672.85E-12206248No hitNo description
Gene3DG3DSA:1.10.10.606.3E-18206246IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDFDANYREK FPSHLPLFFP ENNYSKPPRN DQFSLEEANL SLKGNTNFLQ DLHPLENFDL  60
NLDLDGSSSA SNALFPIQPN SLEPYDLNYN STFGCFPNFE LYETKPFANH APNNNNNVAL  120
GSNLIDNYNQ SGGGLGILGH SQFINPINNM ISSPSPQSYN PFCYYDLGLT RSSYRLSDED  180
SSTTPQNDAT VVVPSRLSAA TTKDVWSEEE DRVLIESHIE IGNKWAEIAK KLPGRTENSI  240
KNHWNATKRR QFSRRKCKSK YPRQSSLLQE YIKSLTLETI NAGCRKKPIS FNNNQLLLPN  300
NDDQTGSSNS SSSDPLIAPE YDFSEVPDFN FDAQMFEESS IDSLLDYAPP NNDHGGGGGG  360
GGGGDGGGRG FFEIVDDSQI GLGPRMMVQH EVKKEFDLVE MINHVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A9e-19203251553MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A9e-19203251553MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6501061e-39HQ650106.1 Gossypium hirsutum clone BAC 067L14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021719037.11e-148transcription factor MYB98-like
TrEMBLA0A0K9S1X20.0A0A0K9S1X2_SPIOL; Uncharacterized protein
STRINGXP_010678927.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-39myb domain protein 98