PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_003720_make.t2
Common NameSOVF_003720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HSF
Protein Properties Length: 377aa    MW: 42422.8 Da    PI: 4.7893
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_003720_make.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.2e-34481392102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Flkk+++++ed+++++++sws+  nsf+v+d+ +f++ +Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F  g+k+l
  Sp_003720_make.t2  48 FLKKTFDMVEDPSTDTIVSWSKARNSFIVWDSIKFSTLLLPKFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHL 130
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+++
  Sp_003720_make.t2 131 LKTIKRRRN 139
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-3744137IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.49E-3344137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-5744137IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3048137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-194871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MESVIVKEEE VTIPFNAGTG SSSISSASSS SFTARPMEGL HEMGPPPFLK KTFDMVEDPS  60
TDTIVSWSKA RNSFIVWDSI KFSTLLLPKF FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLGGQKHL LKTIKRRRNI GQTTQHQVGP CVEIGHYGLD GEMERLRRDR NVLMSEIVKL  180
RQQHQLSREQ IRSMESRLES TERKQQQMMT FLAKALSNPG FVQNLRQRNE HVKAFEGFEI  240
GRKRRLTASP STESLQEEVL SAVVEATEGL ASVQSEIETL FSAALDDESS TDVKEPVLEP  300
DPIPSPVVAN LGNVGEISWE ELLSEDLMGE MESIPGDEQE VDIPVEELVP DPSNWGSIGV  360
ILALIIEGRQ EDARSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-24461378110Heat shock factor protein 1
5hdn_A1e-24461378110Heat shock factor protein 1
5hdn_B1e-24461378110Heat shock factor protein 1
5hdn_C1e-24461378110Heat shock factor protein 1
5hdn_D1e-24461378110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136LKTIKRR
2164169RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856610.10.0heat shock factor protein HSF30 isoform X1
RefseqXP_021856611.10.0heat shock factor protein HSF30 isoform X1
SwissprotP411521e-125HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0K9S3H80.0A0A0K9S3H8_SPIOL; Uncharacterized protein
STRINGXP_010669379.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-118heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]