PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_003060_scgs.t1 | ||||||||
Common Name | SOVF_003060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | Nin-like | ||||||||
Protein Properties | Length: 263aa MW: 29043.2 Da PI: 8.0331 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 55.5 | 1.1e-17 | 14 | 58 | 4 | 48 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++s+ed+sk Fslp+ +AA Lg +++vLK+iC ++G++RWPhRk Sp_003060_scgs.t1 14 SLSFEDVSKLFSLPLSEAADILGASTSVLKKICNENGLERWPHRK 58 79******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.732 | 1 | 81 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.8E-17 | 15 | 58 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MSSVQNQKSS IDHSLSFEDV SKLFSLPLSE AADILGASTS VLKKICNENG LERWPHRKYL 60 AGKSIEDIKN EAAKEKSKPL RGVSPKSNVT TSSPATSSPS SRPNIDPPSI NPRITDPDRT 120 RPITNNAQQQ PGSKAAAATW RSNQMLASGL TTETSTDEFK YGFPSTGLSE CTYRWWGRSF 180 NGGNGVSKDD TKTNVEDDDD ATCEEKTDSM EEDNRDEVSL SGIRKRAMEE GKKALKFNVL 240 KKYGVDKLGN EEKILLRRLY QTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021862986.1 | 0.0 | protein NLP3-like | ||||
TrEMBL | A0A0K9S245 | 0.0 | A0A0K9S245_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673598.1 | 1e-89 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-09 | RWP-RK domain-containing protein |