PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_001520_mpcs.t1

Common Name

SOVF_001520

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Nin-like

Protein Properties

Length: 912aa MW: 101318 Da PI: 6.6749

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_001520_mpcs.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Sp_001520_mpcs.t1 599 AEKTITLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	589	670	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-25	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.96E-24	810	900	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.3E-23	812	894	No hit	No description
PROSITE profile	PS51745	27.73	815	898	IPR000270	PB1 domain
SMART	SM00666	1.3E-27	815	898	IPR000270	PB1 domain
CDD	cd06407	8.94E-41	816	896	No hit	No description
Pfam	PF00564	5.8E-20	816	897	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MDDAVFHSSV ALGGPSSSPM ELDYMDELLL EGCWLEALDG SNFFHQNAST SGALFDSSYL 60 WPMLEVSNER SNIKTHVRET QELAQDSVQV DTQVGALVST SNGQGLVTIA TDSNQFDKFC 120 DEGSELNKLL WIKPGVNRTA VSVMERLFKA LSYIKDSANG KDLLVQIWVP VVRGSTRILT 180 TVDQPFSINS SSSQLASYRN ISTNYEFAAE EDSCVSVGLP GRVFLGKVPE WTPDVRFFRV 240 DEYPRVSYAQ QCDVRGTLAL PVFEQGSRNC LGVIEVVMTT QKVNYGPELE NVCRALEAVD 300 LRSCSDIPGP QKTQECRSSY QAALPEILEV IKSACSSHGL PLAQTWVPCI QQGKEGCRHS 360 DENLSRCVST VDSACFVANP CMQDFHQACS EHHLFKGQGV AGKAFMTNQP CFSADITTYS 420 KTEYPLSHHA RMFGLCASVA IRLRCIYTGN ADFVLEFFLP TNCRDPEEQK KMLTSLSIII 480 QRVCRSLRVV SDKELDQDTL MLHDPLQKNK MLKVEDTVSG SSQEESCGTA FQDRERASSL 540 PVPQEDQPME VLAGKHLRQH PQHSNMKGSP GRSSLDYSAI GDGSFSTSGK SGEKKRAKAE 600 KTITLEVLRQ HFAGSLKDAA KSIGVCPTTL KRICRQHGIK RWPSRKIKKV GHSLQKLQVV 660 IDSVQGASGA LQIGSFYSNF PDLASPNFSN TSPFSNSKQL DPPQQKELEG TATSKSPSPS 720 CSQSSSSSQC CSSGTQQQQQ QQQTIAQNNE DPITLREGAL KRARSEAELL HTPNQKDGNI 780 ISRSMSQKSL FEHHYNNSTD NRPPLPKFGV QESDTLRVKV TYGEEKIRFR MLRSWRFKDL 840 EQEVIKRFHI GEMNGYQLKY LDDDTEWVLL TCDADLEECI DICRSSQRQT IKLSLQVSYS 900 HSRSSVASNG HL

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MDDAVFHSSV ALGGPSSSPM ELDYMDELLL EGCWLEALDG SNFFHQNAST SGALFDSSYL  60
WPMLEVSNER SNIKTHVRET QELAQDSVQV DTQVGALVST SNGQGLVTIA TDSNQFDKFC  120
DEGSELNKLL WIKPGVNRTA VSVMERLFKA LSYIKDSANG KDLLVQIWVP VVRGSTRILT  180
TVDQPFSINS SSSQLASYRN ISTNYEFAAE EDSCVSVGLP GRVFLGKVPE WTPDVRFFRV  240
DEYPRVSYAQ QCDVRGTLAL PVFEQGSRNC LGVIEVVMTT QKVNYGPELE NVCRALEAVD  300
LRSCSDIPGP QKTQECRSSY QAALPEILEV IKSACSSHGL PLAQTWVPCI QQGKEGCRHS  360
DENLSRCVST VDSACFVANP CMQDFHQACS EHHLFKGQGV AGKAFMTNQP CFSADITTYS  420
KTEYPLSHHA RMFGLCASVA IRLRCIYTGN ADFVLEFFLP TNCRDPEEQK KMLTSLSIII  480
QRVCRSLRVV SDKELDQDTL MLHDPLQKNK MLKVEDTVSG SSQEESCGTA FQDRERASSL  540
PVPQEDQPME VLAGKHLRQH PQHSNMKGSP GRSSLDYSAI GDGSFSTSGK SGEKKRAKAE  600
KTITLEVLRQ HFAGSLKDAA KSIGVCPTTL KRICRQHGIK RWPSRKIKKV GHSLQKLQVV  660
IDSVQGASGA LQIGSFYSNF PDLASPNFSN TSPFSNSKQL DPPQQKELEG TATSKSPSPS  720
CSQSSSSSQC CSSGTQQQQQ QQQTIAQNNE DPITLREGAL KRARSEAELL HTPNQKDGNI  780
ISRSMSQKSL FEHHYNNSTD NRPPLPKFGV QESDTLRVKV TYGEEKIRFR MLRSWRFKDL  840
EQEVIKRFHI GEMNGYQLKY LDDDTEWVLL TCDADLEECI DICRSSQRQT IKLSLQVSYS  900
HSRSSVASNG HL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836631.1	0.0	protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A0K9S3Z8	0.0	A0A0K9S3Z8_SPIOL; Uncharacterized protein
STRING	XP_010692542.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein