PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_001070_untf.t1
Common NameSOVF_001070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 604aa    MW: 68535.4 Da    PI: 4.8513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_001070_untf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.62.9e-1522113198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ff +l+ s   +s+ l++pkkf+++h + + +s + +l+ ++g++W+vk+   k +++  +++GWk+Fv+   +  g f++F+++g+s+f  
  Sp_001070_untf.t1  22 FFYKLMVSPCQQSKKLRIPKKFTKAHRN-ELCS-QSILTVSNGETWKVKF--IKEDNELSFSNGWKDFVEYFSISLGYFLLFEYKGNSNF-- 107
                        667788888999999***********64.4565.6677889*********..99999*****************************9999.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v +f+
  Sp_001070_untf.t1 108 KVNIFD 113
                        999887 PP
2B335.81.4e-11206297199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ff + ++ ++l+   l++p kf++++   ke s+t +l+ +sg+  +v +   k +++ ++++GW+eFv+   ++ g  ++Fk++g+s+f  
  Sp_001070_untf.t1 206 FFVASVKLYNLEGY-LRIPEKFVRKFR--KELSTTSILKVPSGEAQKVAI--VKEGNKLWFQNGWQEFVEYFSINYGFLILFKYEGNSNF-- 290
                        56666777777765.**********98..56999****************..999999****************************9999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         v++f+ 
  Sp_001070_untf.t1 291 SVHIFDP 297
                        9999985 PP
3B347.63e-15499590394
                        EE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   3 kvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         + ++ ++lk  + l +p  f + h + +  + k+++le ++g +Wev +   ++++++++++ W  F+++ gL++gDf+vF+l+g +++  
  Sp_001070_untf.t1 499 VAAMKVYNLKGgAYLNIPMGFGRVHiECEAMQRKQIMLEASDGTQWEVDC--VRNGRKCMFSRRWIIFARQIGLEVGDFCVFELKGAKKKYV 588
                        5555666666646789******9999555667789***************..999999**************************99776645 PP

                        EE CS
                 B3  93 vv 94 
                        v+
  Sp_001070_untf.t1 589 VI 590
                        54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2116115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-2018122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.34E-1820113No hitNo description
PROSITE profilePS5086313.94422115IPR003340B3 DNA binding domain
PfamPF023627.4E-1323113IPR003340B3 DNA binding domain
SMARTSM010195.2E-1323115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20202300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19202300IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.433205298IPR003340B3 DNA binding domain
CDDcd100172.69E-11205296No hitNo description
PfamPF023621.9E-9207296IPR003340B3 DNA binding domain
SMARTSM010194.9E-9207298IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-16493590IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-17493595IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-13496583No hitNo description
SMARTSM010194.5E-6498595IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969498594IPR003340B3 DNA binding domain
PfamPF023629.8E-14500589IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEANRAMKPR RIEESSKKSP TFFYKLMVSP CQQSKKLRIP KKFTKAHRNE LCSQSILTVS  60
NGETWKVKFI KEDNELSFSN GWKDFVEYFS ISLGYFLLFE YKGNSNFKVN IFDLTGFEIS  120
YPCKKPEMLI TPSSSSKTGY GEVMQLSSED EDCVGDGDGD GDGDGEEEMD NARECNILGY  180
PQWLKKCKGL INSLTAAGIS LPKKPFFVAS VKLYNLEGYL RIPEKFVRKF RKELSTTSIL  240
KVPSGEAQKV AIVKEGNKLW FQNGWQEFVE YFSINYGFLI LFKYEGNSNF SVHIFDPTAC  300
EISYQRHEPF PQELDDDDDD DDFDDDFDDG DDDDDKNSTE ILPSSAVNLR NSDAEVIQLD  360
SDDEETNDVK EGNLFGCQNA YQTGKYNGIT NVVSTAAGIS SPERPSFVTD VRSYFVHGFK  420
NDSKKPEILH TPSISSKTGY VEVIQPSSED EECVGDEEEM DNTRECTRLG YPLWLKKYEG  480
LINVVTSAGI TLPKNPFFVA AMKVYNLKGG AYLNIPMGFG RVHIECEAMQ RKQIMLEASD  540
GTQWEVDCVR NGRKCMFSRR WIIFARQIGL EVGDFCVFEL KGAKKKYVVI KVHVVKKLDI  600
KSST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836153.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0K9S2S20.0A0A0K9S2S2_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-26B3 family protein