PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof021331
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family SBP
Protein Properties Length: 236aa    MW: 26105.9 Da    PI: 9.182
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17462786PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.61.4e-411288278
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
               C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  Sof021331 12 CSVQGCDADLSRCRDYHRRHKVCEAHSKTPVVTVAGQQQRFCQQCSRFHLLGEFDEVKRSCRKRLDGHNRRRRKPQP 88
               **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-34473IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.052986IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-391090IPR004333Transcription factor, SBP-box
PfamPF031107.9E-311285IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
XPGHAQQAVP ACSVQGCDAD LSRCRDYHRR HKVCEAHSKT PVVTVAGQQQ RFCQQCSRFH  60
LLGEFDEVKR SCRKRLDGHN RRRRKPQPDP LNPAGLFGNH HGVTRFTSYP QLFTTSMAEP  120
KWSVVKTETD VFQDQYYPPV HLNGAGAGSL FHVKDRKHFP FLTNHNNGGW DVATAALGCQ  180
PFTITTTASS ESSSKLSNGN CALSLLSDNP TPAQTAMIPT AQPLGAAMQY GRLPWX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-27985884squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16885KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.131270.0bud| inflorescence| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456859.11e-156squamosa promoter-binding-like protein 2
SwissprotQ0JGI15e-89SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLC5XGC01e-155C5XGC0_SORBI; Uncharacterized protein
STRINGSb03g044160.11e-155(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-36SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]