PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof021254

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Dof

Protein Properties

Length: 81aa MW: 8806.67 Da PI: 8.0592

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17272066	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	42.6	1.2e-13	53	80	2	29
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqP 29 ++++l+cprC stntk Cyynnys+ qP Sof021254 53 QQQQLECPRCRSTNTKVCYYNNYSTVQP 80 6899***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-10	55	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MAPAASIHSA TAAAAGASKR PADSDAELPF DSSALHQQGD EAARKGQLQQ PRQQQQLECP 60 RCRSTNTKVC YYNNYSTVQP W

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.732	1e-136	leaf\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448779.1	1e-32	dof zinc finger protein DOF5.8
TrEMBL	C5YAJ6	2e-31	C5YAJ6_SORBI; Dof-type zinc finger protein 21
STRING	Sb06g033010.1	4e-32	(Sorghum bicolor)