PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof021192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | ZF-HD | ||||||||
Protein Properties | Length: 214aa MW: 22176.3 Da PI: 10.7803 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.8 | 6e-29 | 85 | 137 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++rY+eCl+NhAa+lG+h++DGC+Efmps g++ aaal CaACgCHR+FHRre Sof021192 85 QWRYRECLRNHAARLGAHVLDGCCEFMPS-GSD-GAAALACAACGCHRSFHRREA 137 789*************************9.555.589****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.9E-26 | 86 | 137 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-10 | 87 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-23 | 87 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.941 | 88 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
GYRADPRVRL PPPGFLPAHF QPPQLHPRKA ERERDRAAGA QQPQVRRHQE PARNGVLGGG 60 GGAAPASAAS TLGLASVGPV VEAAQWRYRE CLRNHAARLG AHVLDGCCEF MPSGSDGAAA 120 LACAACGCHR SFHRREAIPG GVAPAVAVSP SEMTLTVRAS ANFSRCMPLL LAPPKMHTPP 180 AGQSGRPGGP LPAGVTDLFR GVFSGAPSLG NRVV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.22075 | 0.0 | inflorescence| meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314333.1 | 3e-78 | zinc-finger homeodomain protein 7 isoform X2 | ||||
Swissprot | Q8S3Q9 | 5e-29 | ZHD7_ORYSJ; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A194YRQ3 | 8e-77 | A0A194YRQ3_SORBI; Uncharacterized protein | ||||
STRING | Sb04g030480.1 | 9e-74 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-14 | homeobox protein 22 |