PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof021186 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 146aa MW: 17079.8 Da PI: 7.8796 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 78 | 116 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 rg+W++ + +l++++ +q+G++ ++ I + ++ +t+ q++ Sof021186 78 RGKWSKSDTDLFYEGLRQFGSD-FAMIQQLFP-DKTRHQVR 116 89********************.*********.******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-9 | 71 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 1.4E-21 | 71 | 138 | No hit | No description |
SMART | SM00717 | 1.8E-5 | 77 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 78 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MKLSAAHLRL LQEARARVNP KETPSGPSSN TRSFELEDMD DLDYRDEEAR FFDNDGTENH 60 VQNATKLNYQ SYMNKPARGK WSKSDTDLFY EGLRQFGSDF AMIQQLFPDK TRHQVRQXIK 120 SEEKKKPLLV HDAIIHRSGD NLYLQR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.23761 | 0.0 | callus| crown| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021320644.1 | 5e-92 | transcription factor TFIIIB component B'' | ||||
TrEMBL | A0A1B6PF40 | 1e-90 | A0A1B6PF40_SORBI; Uncharacterized protein | ||||
STRING | Sb07g001792.1 | 4e-82 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.2 | 4e-26 | MYB_related family protein |