PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof021146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 57aa MW: 6737.67 Da PI: 9.5698 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 34 | 57 | 1 | 24 |
TSSS-HHHHHHHHHHHHHTTTT-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtW 24 +g+WT eEde+lv+ v+++G ++W Sof021146 34 KGPWTDEEDEQLVRFVRLFGERRW 57 79********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.767 | 29 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.45E-6 | 31 | 57 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-8 | 33 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 34 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-5 | 36 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
MSSSLLCSRR NHKKDRDGEQ VQVIMSTAAA VMRKGPWTDE EDEQLVRFVR LFGERRW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.1729 | 3e-60 | crown| inflorescence| leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303706.1 | 4e-24 | transcription factor MYB59-like | ||||
TrEMBL | A0A1Z5R158 | 8e-23 | A0A1Z5R158_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G013581_P01 | 5e-20 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 2e-08 | myb domain protein 48 |