PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | bHLH | ||||||||
Protein Properties | Length: 94aa MW: 10587.4 Da PI: 9.6379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24 | 6.9e-08 | 40 | 72 | 18 | 54 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ +L++l+P+ a k + +++L +Av+YIk+L Sof020809 40 KRLKKLQDLVPNmA-----KQTNTSDMLDLAVDYIKEL 72 6899********55.....779**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.169 | 22 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-4 | 32 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-11 | 38 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-5 | 39 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-13 | 40 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-5 | 41 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MDVYLQPQQN SVASKVRVKV AAQLTREALL RGKKEQGLAK RLKKLQDLVP NMAKQTNTSD 60 MLDLAVDYIK ELKDQVEKLK HDQANCCCLG NKSC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001332786.1 | 3e-37 | uncharacterized protein LOC100284495 | ||||
TrEMBL | A0A2P1L3F2 | 1e-38 | A0A2P1L3F2_9POAL; Flowering BHLH 1 | ||||
STRING | Si001123m | 9e-34 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-17 | bHLH family protein |