PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | SBP | ||||||||
Protein Properties | Length: 113aa MW: 11351.6 Da PI: 8.227 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 47.4 | 5e-15 | 77 | 110 | 1 | 34 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl 34 +C v+gC++dls+++eyhrrhkvCe+hsk+pvv+ Sof020364 77 ACSVDGCRSDLSRCREYHRRHKVCEAHSKTPVVV 110 5******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-14 | 71 | 112 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 14.135 | 75 | 113 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.93E-14 | 77 | 113 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.9E-9 | 78 | 111 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MDWAAASRAP SWGAAATDPG PTMLSFAGPS SSTSPAADAE VRLQDFATGL AQSARLAGAA 60 GAGRRSCMAG GSAGAEACSV DGCRSDLSRC REYHRRHKVC EAHSKTPVVV GGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.1846 | 1e-133 | bud| inflorescence| meristem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352598.1 | 1e-50 | SBP-transcription factor 3 | ||||
Refseq | XP_008677048.1 | 3e-50 | squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X1 | ||||
Refseq | XP_008677050.1 | 1e-50 | squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X2 | ||||
TrEMBL | C0P8S5 | 3e-49 | C0P8S5_MAIZE; SBP transcription factor | ||||
STRING | GRMZM2G106798_P01 | 5e-50 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-13 | SBP family protein |