PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | B3 | ||||||||
Protein Properties | Length: 114aa MW: 13266.8 Da PI: 5.299 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.1 | 2.7e-12 | 15 | 80 | 22 | 88 |
H.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 22 faeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrs 88 f ++hg+++++ ++l++ grsW+v+l+ ++++ ++ GW +F+ +n L++gD++ F+++++ Sof020323 15 FQNAHGYVPRRRVELQM---AGRSWTVNLK--RSKRLlgdrSAFKYGWHQFCVDNVLEVGDVCFFRVIREG 80 56677888888766664...68*******4..4433244458899*********************98764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.137 | 1 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-17 | 13 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-12 | 14 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-9 | 16 | 80 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.70E-10 | 33 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
NLREAEPVPE RARGFQNAHG YVPRRRVELQ MAGRSWTVNL KRSKRLLGDR SAFKYGWHQF 60 CVDNVLEVGD VCFFRVIREG SGCGDEDEEW EPEEEDDEHV LKVEVRKNNG TFVS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021311974.1 | 9e-45 | B3 domain-containing protein Os03g0212300 | ||||
Swissprot | Q10Q26 | 3e-27 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A1Z5SAS4 | 3e-43 | A0A1Z5SAS4_SORBI; Uncharacterized protein | ||||
TrEMBL | C5WTM5 | 2e-43 | C5WTM5_SORBI; Uncharacterized protein | ||||
STRING | Sb01g043110.1 | 3e-44 | (Sorghum bicolor) |
Publications ? help Back to Top | |||
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