PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | WRKY | ||||||||
Protein Properties | Length: 116aa MW: 13047.2 Da PI: 9.9104 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109.1 | 2.1e-34 | 7 | 65 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++p+sYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe Sof020272 7 LDDGYRWRKYGQKVVKGNPHPKSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 65 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 36.185 | 2 | 67 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-34 | 3 | 67 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-29 | 4 | 67 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-39 | 7 | 66 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 8 | 65 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
XREDDLLDDG YRWRKYGQKV VKGNPHPKSY YKCTFAGCNV RKHIERASSD PKAVITTYEG 60 KHNHEPPVGR GSNQNAGISQ QKGQNNISSN QASLPRPDFS NANQMPLGIL QFKSEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-37 | 3 | 67 | 13 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-37 | 3 | 67 | 13 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.18720 | 0.0 | crown| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442198.1 | 2e-75 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-35 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | C5YP19 | 4e-74 | C5YP19_SORBI; Uncharacterized protein | ||||
STRING | Sb08g016240.1 | 7e-75 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 4e-38 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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