PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sof020181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 119aa MW: 12114.2 Da PI: 8.2339 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 39.3 | 2.1e-12 | 95 | 119 | 3 | 27 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtC 27 g++sCqdCGnqakkdC+h+RCRtC Sof020181 95 GGGVSCQDCGNQAKKDCVHQRCRTC 119 5789********************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.2E-9 | 97 | 119 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 119 aa Download sequence Send to blast |
MAGSFPLGGG GHSREAPASS VPPVHPSDAA SFLYAARAGA GLQLWQQHEQ QQQHPFYTSN 60 IIRFSDDPSP GAAPSLTGAA SSSSSRGTRS GGGGGGGVSC QDCGNQAKKD CVHQRCRTC |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sof.15297 | 1e-70 | callus| inflorescence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670344.1 | 2e-45 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A1D6ETR1 | 5e-44 | A0A1D6ETR1_MAIZE; Protein SHI RELATED SEQUENCE 1 | ||||
STRING | GRMZM2G080295_P01 | 8e-45 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51060.1 | 5e-09 | Lateral root primordium (LRP) protein-related |