PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof020105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 13518.5 Da PI: 7.697 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.8e-14 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++rWT+eE+ l+ +v+++G+g W+tI r R+ ++k++w+++ Sof020105 5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDSDfsellRLRSNVDLKDKWRNL 56 79***********************************99***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.226 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-16 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.09E-19 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MGAPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDSDFSEL LRLRSNVDLK DKWRNLSVTA 60 GGYGSREKAR MALKKGRRVV PKLTAEPMDV DGKDMDIAHD AIIEAEPLAM ALEPLAIEES 120 PD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455864.1 | 3e-80 | single myb histone 1 | ||||
Swissprot | B4FT40 | 3e-75 | SMH2_MAIZE; Single myb histone 2 | ||||
TrEMBL | A0A0C6WCL3 | 8e-82 | A0A0C6WCL3_9POAL; ScMYB54 protein | ||||
STRING | Sb03g026470.1 | 1e-79 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 8e-37 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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