PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof020010
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 125aa    MW: 12967.3 Da    PI: 5.1405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17288476PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-1078124354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+Er R +riN  + +Lr+++P +      K++Ka+ L +++ ++k+L
  Sof020010  78 KSHSEAERAREERINAHLGTLRTMVPCS-----DKMDKAALLAEVITHVKNL 124
                58*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1068124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.64975124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-1078124No hitNo description
PfamPF000104.4E-878124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1079124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDLGSVPFAD AGLPDAFYGG GHGHNDYGLV SQLGLGASST SPVVLDGGGL LDAAASTEEA  60
PKRKGDPPPD DKAAMALKSH SEAERAREER INAHLGTLRT MVPCSDKMDK AALLAEVITH  120
VKNLX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.111860.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457128.14e-49transcription factor bHLH30
TrEMBLA0A3L6FN232e-49A0A3L6FN23_MAIZE; Transcription factor bHLH30
STRINGGRMZM2G016039_P017e-51(Zea mays)
STRINGGRMZM2G166642_P017e-51(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-09bHLH family protein