PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | SBP | ||||||||
Protein Properties | Length: 126aa MW: 12872 Da PI: 8.3544 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 58.2 | 2.1e-18 | 74 | 116 | 1 | 43 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfC 43 +C v+gC++dls+++eyhrrhkvCevhsk+p v+v g+eqrf Sof019978 74 ACSVDGCRSDLSRCREYHRRHKVCEVHSKTPGVVVGGQEQRFX 116 5****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.6E-19 | 68 | 116 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 15.281 | 72 | 126 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-17 | 74 | 115 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-12 | 75 | 115 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MDWAAASGAP SWGAAATDPG PTMLSFAGPS SSTSPAADAE VRLQDFAVGL AQSARPAGAG 60 RRSRAAGGSA GAEACSVDGC RSDLSRCREY HRRHKVCEVH SKTPGVVVGG QEQRFXSAMQ 120 PVSHAV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.1846 | 0.0 | bud| inflorescence| meristem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352598.1 | 5e-55 | SBP-transcription factor 3 | ||||
Refseq | XP_008677048.1 | 1e-54 | squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X1 | ||||
Refseq | XP_008677050.1 | 5e-55 | squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X2 | ||||
TrEMBL | A0A3L6F596 | 1e-53 | A0A3L6F596_MAIZE; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | C0P8S5 | 1e-53 | C0P8S5_MAIZE; SBP transcription factor | ||||
STRING | GRMZM2G106798_P01 | 2e-54 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-16 | SBP family protein |