PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | G2-like | ||||||||
Protein Properties | Length: 139aa MW: 14497.3 Da PI: 7.417 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 54.6 | 2.3e-17 | 38 | 69 | 25 | 56 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRla 56 + AtPk+i+e+m+v+gLt+++vkSHLQkYRl+ Sof019402 38 KXATPKQIREVMQVDGLTNDEVKSHLQKYRLH 69 68****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-15 | 34 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-7 | 35 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-14 | 38 | 69 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
XLALSGSAAS QQEGEXFLFT GVSPAVCCRF ASNSVALKXA TPKQIREVMQ VDGLTNDEVK 60 SHLQKYRLHN RRSPGAAPVS QPIMLVGGLW APQEQSSSGS PQGPLQFSGS GVAISTATVG 120 GGDSSSSDDD NKSEGYSRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.18986 | 1e-37 | callus| crown| inflorescence| leaf| root| seed| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307622.1 | 4e-49 | transcription factor HHO5-like | ||||
TrEMBL | A0A059Q2Z5 | 2e-63 | A0A059Q2Z5_9POAL; DNA binding protein | ||||
STRING | Sb01g007130.1 | 1e-48 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25790.1 | 1e-18 | G2-like family protein |