PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | LSD | ||||||||
Protein Properties | Length: 139aa MW: 14511.9 Da PI: 8.4906 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.4 | 2.4e-13 | 8 | 32 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+r A+ VRC++CdtV Sof019394 8 CGGCQTLLMYTRSATTVRCSCCDTV 32 ************************9 PP | |||||||
2 | zf-LSD1 | 51.4 | 1.8e-16 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ Sof019394 46 CGQCQTVLMYPYGAPSVKCAICNFI 70 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.9E-13 | 6 | 35 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.7E-11 | 8 | 32 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.7E-12 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-14 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEMARLICGG CQTLLMYTRS ATTVRCSCCD TVNLVRPVSS IAHVNCGQCQ TVLMYPYGAP 60 SVKCAICNFI TNVGGVTPVR PLPPALPASS GNSYSIPSTS VPTNQSQNVT VVVENPMTVD 120 DKGKLVSNVV VGVTSGGKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.4378 | 0.0 | callus| inflorescence| leaf| root| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443528.1 | 2e-93 | protein LOL2 | ||||
Swissprot | Q2QMB3 | 3e-73 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A1B6PE69 | 2e-91 | A0A1B6PE69_SORBI; Uncharacterized protein | ||||
TrEMBL | H9B8F6 | 3e-92 | H9B8F6_MISSI; Putative zinc finger LOL2 | ||||
STRING | Sb08g021100.1 | 7e-93 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 6e-35 | LSD family protein |
Publications ? help Back to Top | |||
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