PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | NF-YB | ||||||||
Protein Properties | Length: 142aa MW: 16124.8 Da PI: 4.8485 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 51.3 | 2.9e-16 | 8 | 106 | 6 | 97 |
NF-YB 6 rflPianvsrimkkvlPana.......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +lP a v r++k l a + kda e + fi ++++ a+d c++ kr+ti++dd+l al ++ f ++vepl++ l+++r+ +++k Sof019263 8 DELPRAIVRRLVKDKLSHVAggdgaevIVNKDAMVAFAESARIFIHYLSATANDMCKESKRQTISADDVLKALDEMEFSEFVEPLRTSLQEFRNKNADK 106 5789999999999988754312222225899**************************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-34 | 9 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-10 | 9 | 80 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.82E-28 | 10 | 139 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
XLTEAEVDEL PRAIVRRLVK DKLSHVAGGD GAEVIVNKDA MVAFAESARI FIHYLSATAN 60 DMCKESKRQT ISADDVLKAL DEMEFSEFVE PLRTSLQEFR NKNADKRSEA NKKQKEKRRK 120 LNEETLPQKE NDPADDAKEN DD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.3150 | 1e-137 | bud| inflorescence| leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310236.1 | 2e-88 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A1E5UII8 | 4e-89 | A0A1E5UII8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb01701.1.p | 2e-84 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-38 | nuclear factor Y, subunit B11 |