PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | BES1 | ||||||||
Protein Properties | Length: 143aa MW: 15940.1 Da PI: 10.9261 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 182.8 | 1.5e-56 | 14 | 104 | 1 | 91 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 g++gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkgskp+e+++++g+s ++p Sof019230 14 GAGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKPMERMDHIGCSXVTKPL 104 689**********************************************************************************988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.8E-50 | 16 | 100 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MASGGSGGGL GAAGAGGRMP TWRERENNKR RERRRRAIAA KIFAGLRAHG GYKLPKHCDN 60 NEVLKALCNE AGWVVEPDGT TYRKGSKPME RMDHIGCSXV TKPLFLIPSQ STSIIQCKPY 120 FLLIPQRRIF PLPPSQRNGQ WQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 1e-24 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 1e-24 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 1e-24 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 1e-24 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.11195 | 9e-60 | crown| inflorescence| meristem| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675300.1 | 2e-42 | PREDICTED: BES1/BZR1 homolog protein 4 | ||||
Swissprot | Q0JPT4 | 6e-31 | BZR2_ORYSJ; Protein BZR1 homolog 2 | ||||
Swissprot | Q6EUF1 | 6e-31 | BZR4_ORYSJ; Protein BZR1 homolog 4 | ||||
TrEMBL | A0A4D8Z6E1 | 1e-37 | A0A4D8Z6E1_SALSN; Uncharacterized protein | ||||
STRING | XP_010675300.1 | 6e-42 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18890.1 | 5e-29 | BES1/BZR1 homolog 3 |
Publications ? help Back to Top | |||
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