PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sof019038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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Family | LBD | ||||||||
Protein Properties | Length: 147aa MW: 15028.6 Da PI: 6.5349 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 30 | 1.5e-09 | 2 | 42 | 57 | 97 |
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++sl+yeA r+ +Pv+Gavg++ ++++q +q ++e++l+ Sof019038 2 VFQSLLYEAAGRTINPVSGAVGLLGAGSWQPCQQAVETVLR 42 689********************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.3E-5 | 2 | 39 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
XVFQSLLYEA AGRTINPVSG AVGLLGAGSW QPCQQAVETV LRGGAIGPLP EFDVGRDTFA 60 LAARRAVGCS TFSTAKRAPT TTRTNVGAPP EPSCDLGLWL SPGSPPAPGE RRRPGTPSMT 120 SEESVTTATT SGGGGGGREP ELLNLFV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sof.17342 | 0.0 | inflorescence| meristem| seed |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460949.1 | 6e-82 | LOB domain-containing protein 37 | ||||
TrEMBL | C5XD46 | 1e-80 | C5XD46_SORBI; Uncharacterized protein | ||||
STRING | Sb02g038030.1 | 2e-81 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-20 | LOB domain-containing protein 38 |